PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555253.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 295aa    MW: 33489.1 Da    PI: 9.4832
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind328.61.7e-10012951301
       GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76 
                     md+ g++e  r k+ yy+                ++++l   +++++ms++aerda+i+ern als+k++a+a+rd+a++qrdkal+er++al+e
  XP_010555253.1   1 MDNGGQYEsvRYKPdYYKgthsmwnmmpqhqmkeQHNALV--MNKKIMSILAERDAAIQERNEALSAKREALAARDEALQQRDKALSERDNALME 93 
                     99****9999****9************8776654345555..99*************************************************** PP

       GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
                     rdn+++al+++ensl++ l    + +s+      +++        +a+++ e+++ ea+pi+   +e ++ k +k r   kk++++ ++k kk +
  XP_010555253.1  94 RDNAIAALQYRENSLNFPL----KHSSQ------SDM-------AEAINTGETHIPEAFPISAISPEPTNMKLTK-R---KKERKPVQSKGKKVG 167
                     *************955433....22222......333.......345667889999*******999988888777.3...444455556667777 PP

       GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                     e+ +++v++++  +r +++++s+d++ln v +De+t+PvPvC+CtG+ + CYkWGnGGWqS+CCttt+S+yPLP++ ++r++R++grKmS+++f 
  XP_010555253.1 168 EDLNRRVASPG--KRCRTDWDSTDVGLNLVIFDETTMPVPVCTCTGSVHHCYKWGNGGWQSSCCTTTLSQYPLPQMLNKRHSRMGGRKMSGSVFM 260
                     8999*******..69******************************************************************************** PP

       GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +lL++LaaeG+dls+pvDLkd+WA+HGtn+++ti+
  XP_010555253.1 261 RLLSRLAAEGHDLSCPVDLKDYWARHGTNRYITIK 295
                     **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.7E-1501295IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-961295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDNGGQYESV RYKPDYYKGT HSMWNMMPQH QMKEQHNALV MNKKIMSILA ERDAAIQERN  60
EALSAKREAL AARDEALQQR DKALSERDNA LMERDNAIAA LQYRENSLNF PLKHSSQSDM  120
AEAINTGETH IPEAFPISAI SPEPTNMKLT KRKKERKPVQ SKGKKVGEDL NRRVASPGKR  180
CRTDWDSTDV GLNLVIFDET TMPVPVCTCT GSVHHCYKWG NGGWQSSCCT TTLSQYPLPQ  240
MLNKRHSRMG GRKMSGSVFM RLLSRLAAEG HDLSCPVDLK DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555253.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_010555254.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-172BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLD7LL181e-173D7LL18_ARALL; ATBPC4/BBR/BPC4/BPC4
STRINGXP_010555253.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-174basic pentacysteine 4