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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010555254.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 295aa MW: 33489.1 Da PI: 9.4832 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010555254.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 328.6 | 1.7e-100 | 1 | 295 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76
md+ g++e r k+ yy+ ++++l +++++ms++aerda+i+ern als+k++a+a+rd+a++qrdkal+er++al+e
XP_010555254.1 1 MDNGGQYEsvRYKPdYYKgthsmwnmmpqhqmkeQHNALV--MNKKIMSILAERDAAIQERNEALSAKREALAARDEALQQRDKALSERDNALME 93
99****9999****9************8776654345555..99*************************************************** PP
GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
rdn+++al+++ensl++ l + +s+ +++ +a+++ e+++ ea+pi+ +e ++ k +k r kk++++ ++k kk +
XP_010555254.1 94 RDNAIAALQYRENSLNFPL----KHSSQ------SDM-------AEAINTGETHIPEAFPISAISPEPTNMKLTK-R---KKERKPVQSKGKKVG 167
*************955433....22222......333.......345667889999*******999988888777.3...444455556667777 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
e+ +++v++++ +r +++++s+d++ln v +De+t+PvPvC+CtG+ + CYkWGnGGWqS+CCttt+S+yPLP++ ++r++R++grKmS+++f
XP_010555254.1 168 EDLNRRVASPG--KRCRTDWDSTDVGLNLVIFDETTMPVPVCTCTGSVHHCYKWGNGGWQSSCCTTTLSQYPLPQMLNKRHSRMGGRKMSGSVFM 260
8999*******..69******************************************************************************** PP
GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+lL++LaaeG+dls+pvDLkd+WA+HGtn+++ti+
XP_010555254.1 261 RLLSRLAAEGHDLSCPVDLKDYWARHGTNRYITIK 295
**********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MDNGGQYESV RYKPDYYKGT HSMWNMMPQH QMKEQHNALV MNKKIMSILA ERDAAIQERN 60
EALSAKREAL AARDEALQQR DKALSERDNA LMERDNAIAA LQYRENSLNF PLKHSSQSDM 120
AEAINTGETH IPEAFPISAI SPEPTNMKLT KRKKERKPVQ SKGKKVGEDL NRRVASPGKR 180
CRTDWDSTDV GLNLVIFDET TMPVPVCTCT GSVHHCYKWG NGGWQSSCCT TTLSQYPLPQ 240
MLNKRHSRMG GRKMSGSVFM RLLSRLAAEG HDLSCPVDLK DYWARHGTNR YITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
