PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555321.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24119.9 Da    PI: 9.8849
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaev+vi+fs++g+l e+ss
  XP_010555321.1  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIVFSEKGRLCEFSS 59
                    79***********************************************96 PP
2K-box645.5e-2284173998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++   + l+qe a + ++ie L+  +R+llG++L s+s++eL++L +qL+ sl++iR++K  l+ eq+e+l+ kek l +en++L +k+
  XP_010555321.1  84 GNQDYIQLLKQETASMIRKIELLEVHKRKLLGQGLASCSIEELHELDSQLQISLSHIRARKALLFNEQVEKLKTKEKLLWKENTRLCQKY 173
                     344557889*****************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.511161IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-40160IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-33381IPR002100Transcription factor, MADS-box
CDDcd002656.70E-41375No hitNo description
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2286173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.47589179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVSVIVFSE KGRLCEFSSS  60
EMQKTMERYR KYTDSNNNQI SKSGNQDYIQ LLKQETASMI RKIELLEVHK RKLLGQGLAS  120
CSIEELHELD SQLQISLSHI RARKALLFNE QVEKLKTKEK LLWKENTRLC QKYGTNPLEA  180
RVLQDKSRAI TPSLEVETDL IIGLPERSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-20194190Myocyte-specific enhancer factor 2B
1tqe_Q7e-20194190Myocyte-specific enhancer factor 2B
1tqe_R7e-20194190Myocyte-specific enhancer factor 2B
1tqe_S7e-20194190Myocyte-specific enhancer factor 2B
6byy_A9e-20194190MEF2 CHIMERA
6byy_B9e-20194190MEF2 CHIMERA
6byy_C9e-20194190MEF2 CHIMERA
6byy_D9e-20194190MEF2 CHIMERA
6c9l_A7e-20194190Myocyte-specific enhancer factor 2B
6c9l_B7e-20194190Myocyte-specific enhancer factor 2B
6c9l_C7e-20194190Myocyte-specific enhancer factor 2B
6c9l_D7e-20194190Myocyte-specific enhancer factor 2B
6c9l_E7e-20194190Myocyte-specific enhancer factor 2B
6c9l_F7e-20194190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555321.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555321.11e-151PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS17e-90AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D3AYB01e-86A0A0D3AYB0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DIR31e-86A0A3P6DIR3_BRAOL; Uncharacterized protein
STRINGXP_010555321.11e-151(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-85AGAMOUS-like 42