PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555365.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

CAMTA

Protein Properties

Length: 1050aa MW: 117615 Da PI: 6.4369

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178.6	7.8e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++++++++e++trp+sgsl+L+nrk +r+frkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n+++qr XP_010555365.1 20 LEAQNRWLRPPEICEILRNYQRFQISTEAPTRPPSGSLFLFNRKELRFFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENLQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leeel++iv+vhylevk XP_010555365.1 115 RSYWMLEEELSHIVFVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.557	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.6E-49	21	135	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.13E-15	477	563	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	5.2E-16	576	775	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-15	659	774	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.91	667	745	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.49E-11	669	772	No hit	No description
PROSITE profile	PS50088	10.152	713	745	IPR002110	Ankyrin repeat
SMART	SM00248	0.0095	713	742	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.58E-8	871	930	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	94	879	901	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.081	882	900	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.657	882	909	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	902	924	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.468	903	927	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-4	905	924	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence Send to blast
MAEARRSSAI NRLDMDQILL EAQNRWLRPP EICEILRNYQ RFQISTEAPT RPPSGSLFLF 60 NRKELRFFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDNE NLQRRSYWML 120 EEELSHIVFV HYLEVKGSRV STSFNGVQRT EDASRCSPET GDALSNEFDG CASCSINQNY 180 HSMYSQTTDT ASVSGVQTSD YEDAESAYNH HANSKILSQQ DLQPPGTEEA LAGFDPYYQT 240 SLPVRDNYQK GFLAMPGPNS SIMVDKNKEN NCVGLTSGSR KSIDSQTWEE ILGNCGSGFE 300 VLPFQAPYTS VEPTNARDGI SKQEHDILDQ LLHNFTFATQ DFASQQDPME KCQARILNSD 360 FTSVHTSRFH GQDLEAMHNP AANGNAPYSS VITKHLFDGP LDDKGLKKMD SFNRWMSREL 420 GDVDDLASAN DSFTHSRSRT YWDEIETENG ANTPNSRRDL DGYAISPSLS QEQLFSIIDF 480 SPSWTYAGHE VKVLVTGRFL KAQEDFQNFK WSCMFGQFEV PAEVIADGVL RCIAPMHEVA 540 RVPFYITCSN RLACSEVREF EFRVGHAPAM DRGRDDSTHI SIENLQARFV KLLCSKSVCP 600 TSVASTDSDL SHVNKKISSL LVENTNDLDQ MLTVSDSGNV LSSEKMKNQL IEKLLKEKLH 660 SWLLVKVAER GKGPSVLDES GQGVLHFAAA LGYDWALEPT VIAGVSVNFR DVNGWTALHW 720 AAFFGREHTV GSLIALGADP GAVTDPTPVY PSGCSTSDLA YANGHKGIAG YLAESALEAH 780 LSLLSLTDQL GDGGKASPAR TAADSAPGKS SSSMTDSLAA VSKATQAAAR IHQVFRVQSF 840 QRKQMKEFGG NNKFGMSNEH ALSLVTLKAN KAGRYTDDSV YAAATRIQNK FRSYKGRKDY 900 LITRQRIIKI QAHVRGYQVR KNYRKIIWSV GILEKVILRW RRKGSGLRGF KPEALTDRMQ 960 DISENEDDDD DFFKKGRKQT EERLHKALAR VKSMAQYPEA RDQYRRLLNV VNEIQESKIK 1020 ALAISEETSY IDDDDLIDLD ALLDDTPMSF

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence Send to blast

MAEARRSSAI NRLDMDQILL EAQNRWLRPP EICEILRNYQ RFQISTEAPT RPPSGSLFLF  60
NRKELRFFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDNE NLQRRSYWML  120
EEELSHIVFV HYLEVKGSRV STSFNGVQRT EDASRCSPET GDALSNEFDG CASCSINQNY  180
HSMYSQTTDT ASVSGVQTSD YEDAESAYNH HANSKILSQQ DLQPPGTEEA LAGFDPYYQT  240
SLPVRDNYQK GFLAMPGPNS SIMVDKNKEN NCVGLTSGSR KSIDSQTWEE ILGNCGSGFE  300
VLPFQAPYTS VEPTNARDGI SKQEHDILDQ LLHNFTFATQ DFASQQDPME KCQARILNSD  360
FTSVHTSRFH GQDLEAMHNP AANGNAPYSS VITKHLFDGP LDDKGLKKMD SFNRWMSREL  420
GDVDDLASAN DSFTHSRSRT YWDEIETENG ANTPNSRRDL DGYAISPSLS QEQLFSIIDF  480
SPSWTYAGHE VKVLVTGRFL KAQEDFQNFK WSCMFGQFEV PAEVIADGVL RCIAPMHEVA  540
RVPFYITCSN RLACSEVREF EFRVGHAPAM DRGRDDSTHI SIENLQARFV KLLCSKSVCP  600
TSVASTDSDL SHVNKKISSL LVENTNDLDQ MLTVSDSGNV LSSEKMKNQL IEKLLKEKLH  660
SWLLVKVAER GKGPSVLDES GQGVLHFAAA LGYDWALEPT VIAGVSVNFR DVNGWTALHW  720
AAFFGREHTV GSLIALGADP GAVTDPTPVY PSGCSTSDLA YANGHKGIAG YLAESALEAH  780
LSLLSLTDQL GDGGKASPAR TAADSAPGKS SSSMTDSLAA VSKATQAAAR IHQVFRVQSF  840
QRKQMKEFGG NNKFGMSNEH ALSLVTLKAN KAGRYTDDSV YAAATRIQNK FRSYKGRKDY  900
LITRQRIIKI QAHVRGYQVR KNYRKIIWSV GILEKVILRW RRKGSGLRGF KPEALTDRMQ  960
DISENEDDDD DFFKKGRKQT EERLHKALAR VKSMAQYPEA RDQYRRLLNV VNEIQESKIK  1020
ALAISEETSY IDDDDLIDLD ALLDDTPMSF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555365.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555366.1	0.0	PREDICTED: calmodulin-binding transcription activator 3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	V4L6Z9	0.0	V4L6Z9_EUTSA; Uncharacterized protein
TrEMBL	V4LQS4	0.0	V4LQS4_EUTSA; Uncharacterized protein
STRING	XP_010555365.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]