PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555406.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 221aa MW: 24754.8 Da PI: 10.8335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	66	111	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN f++Lr++lP+ a +Ka++L ++v+Y+++L XP_010555406.1 66 KKHSDAERRRRLRINCQFATLRTILPNlA-------KDKASVLGETVRYLNEL 111 68***********************55.......599*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-12	56	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.963	63	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.54E-9	66	116	No hit	No description
Pfam	PF00010	2.3E-9	66	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-13	67	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	69	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.0E-5	142	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MVLLQHLEQG IRPITRYYNP MTYSNTHASL LHGFPSTAAT SSSKLFFRNS AMKQKSKVES 60 KEIAAKKHSD AERRRRLRIN CQFATLRTIL PNLAKDKASV LGETVRYLNE LKKTVKDIEM 120 AAPRLEDDLK LSQCNRGLAK VVFSCSDRKG LMSEIAESLA TTKGKAVRAE IMTVGGRTKC 180 ALYVQGVNGN EGMVRLKKAL KPILNRDLSK NNRITTFHQS S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555406.1	1e-164	PREDICTED: transcription factor bHLH131 isoform X2
Swissprot	P0CB25	2e-85	BH131_ARATH; Transcription factor bHLH131
TrEMBL	D7M9K5	7e-93	D7M9K5_ARALL; Predicted protein
STRING	XP_010555404.1	1e-161	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	2e-81	bHLH family protein