PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555508.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 194aa    MW: 22294.3 Da    PI: 4.6199
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like22.91.9e-07169190122
         G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                     k r++W+peL e+F++av+qLG
  XP_010555508.1 169 KRRVVWSPELREKFLDAVNQLG 190
                     689******************6 PP
2Response_reg39.43.1e-14251291108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHT..TTSEEEEEESTTTHHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireee..pklpiivvtahgeeedaleal 90 
                     vl+ +D+ + +  +++ l + +y +v+ + + eeal ll+++    +D++++Di         ++k   + +   +lpiiv++++ + e ++e++
  XP_010555508.1  25 VLVLEDDLSSLLMMEEQLLSFKY-QVTKCHEEEEALSLLRNNPesrFDMVIIDIH-------YICKFWSQDGskINLPIIVMSSEYSVESVVEVM 111
                     78999999999999998888888.8888888888888885555555*******64.......34444455554578******************* PP

                     HTTESEEEESS--HHHHH CS
    Response_reg  91 kaGakdflsKpfdpeelv 108
                     k Ga d+++Kp++ + l+
  XP_010555508.1 112 KKGACDYITKPVEFDTLR 129
                     ************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.41E-2321137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-2022155No hitNo description
SMARTSM004481.9E-1023132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.4724136IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-1025130IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.18E-1726129No hitNo description
Gene3DG3DSA:1.10.10.601.5E-7166193IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSNSRSDRN SSDMFYGNFP EGLRVLVLED DLSSLLMMEE QLLSFKYQVT KCHEEEEALS  60
LLRNNPESRF DMVIIDIHYI CKFWSQDGSK INLPIIVMSS EYSVESVVEV MKKGACDYIT  120
KPVEFDTLRM IYKHVAKTMV DNAGIRNCNK RVEEEEEDNA SASASASKKR RVVWSPELRE  180
KFLDAVNQLG LDSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555508.11e-142PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ163e-44APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A0D3DC618e-45A0A0D3DC61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EMZ68e-45A0A3P6EMZ6_BRAOL; Uncharacterized protein
TrEMBLD7MNQ47e-45D7MNQ4_ARALL; Uncharacterized protein
STRINGXP_010555508.11e-142(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.13e-26pseudo-response regulator 4