PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555604.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 238aa    MW: 26791.1 Da    PI: 10.2938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-1992142255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg++ ta +Aa+a+++a+ +l+g
  XP_010555604.1  92 RYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTYETAIDAARAYDRAAFRLRG 142
                     7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2392151IPR016177DNA-binding domain
SMARTSM003802.7E-3592156IPR001471AP2/ERF domain
PfamPF008475.6E-1392142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3192151IPR001471AP2/ERF domain
PROSITE profilePS5103225.02792150IPR001471AP2/ERF domain
PRINTSPR003671.7E-1393104IPR001471AP2/ERF domain
CDDcd000188.13E-14100150No hitNo description
PRINTSPR003671.7E-13132152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENHQEQSAL ERIRQHLLAD FSSAESTFIP RLQTISQIQV SKPVSTLSRR KPSLSGIAVP  60
RTSTSPRSSG NNNVVMTNHH RDESEQSGEG RRYRGVRRRP WGKYAAEIRD PNKKGARVWL  120
GTYETAIDAA RAYDRAAFRL RGRKAILNFP LEAGKLCNDG SDDICIEERK RKRGEESVAS  180
TNETMTRKAV KREEQEGCPL TPSSWTEFWD RKGMGIFTVP ELSPLPSLGY SQLVAISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2989151264ATERF1
3gcc_A2e-2989151264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2700896e-56KF270089.1 Cleome hassleriana CRK, PMSR, and integrase-type DNA-binding superfamily protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555604.11e-177PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY902e-71EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLT1YYW81e-83T1YYW8_9ROSI; Integrase-type DNA-binding superfamily protein
STRINGXP_010555604.11e-177(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]