PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555654.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 784aa    MW: 86714.5 Da    PI: 5.9518
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.7e-21112167156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k ++++++q++eLe+lF+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k
  XP_010555654.1 112 KKKYHRHSPYQIQELESLFKECPHPDEKQRLELSRRLGLEGNQIKFWFQNRRTQMK 167
                     79999************************************************999 PP
2START177.39e-563035262206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+k+a+++ p+W k++    e +n de+++ f+ +       +  ea+r++g+v  ++  lve+l+d + +W+e+++     a+t++
  XP_010555654.1 303 LALAAMDELIKLADSNYPLWIKYPnsekEALNHDEYRRVFSGTSCitsagFVAEASRETGLVLSNSLALVETLMDAN-RWTEMFEsivaTASTIK 396
                     6899**********************99999*********55444999999**************************.**********9****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vissg      g lqlm ae+q++splvp R + ++Ry++q+++g w++vdvS d + + p+ +s+v +++lpSg++i++ +ng skvtwveh +
  XP_010555654.1 397 VISSGtggtmdGWLQLMRAEFQVISPLVPtRQVKYLRYCKQQEEGLWAVVDVSSDINGEDPNLQSYVGCRRLPSGCIIQDIGNGCSKVTWVEHSE 491
                     ****************************************************98877777779******************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ +h l+r+l++sg+ +ga +w+ tlqrqce+
  XP_010555654.1 492 YDESNVHRLFRPLLSSGRGFGAERWLVTLQRQCES 526
                     *********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2197169IPR009057Homeodomain-like
SuperFamilySSF466891.96E-20100169IPR009057Homeodomain-like
PROSITE profilePS5007117.508109169IPR001356Homeobox domain
SMARTSM003891.1E-18111173IPR001356Homeobox domain
PfamPF000468.5E-19112167IPR001356Homeobox domain
CDDcd000861.06E-16119169No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084841.878293529IPR002913START domain
SuperFamilySSF559611.19E-31296527No hitNo description
CDDcd088751.66E-112297525No hitNo description
SMARTSM002343.0E-46302526IPR002913START domain
PfamPF018521.1E-48303526IPR002913START domain
SuperFamilySSF559616.59E-17547770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSDIVFEKGD LSPSSCSQST NTPEKIPFFF SGHCLKREKL DKQAKGIKYK KGKMNGHGDI  60
GLCGEIFDPT FLERIRDDEY ENRSGSDNLG SVSADDQEAG GGQEHHHPKK KKKKYHRHSP  120
YQIQELESLF KECPHPDEKQ RLELSRRLGL EGNQIKFWFQ NRRTQMKTQL ERHENAILRE  180
ENEKLIAENN LLKVAMRSPM CNVCGGPAVP GEVTFEQQNL GIENARLKDE LSRVCGLANK  240
FLVGPVSALA GPFPRPSVLD ALYSGFPVGR TGGTGIDFSD GPAPIKPEVG NELMYERSMF  300
IDLALAAMDE LIKLADSNYP LWIKYPNSEK EALNHDEYRR VFSGTSCITS AGFVAEASRE  360
TGLVLSNSLA LVETLMDANR WTEMFESIVA TASTIKVISS GTGGTMDGWL QLMRAEFQVI  420
SPLVPTRQVK YLRYCKQQEE GLWAVVDVSS DINGEDPNLQ SYVGCRRLPS GCIIQDIGNG  480
CSKVTWVEHS EYDESNVHRL FRPLLSSGRG FGAERWLVTL QRQCESFQTI LSSLDDPIDN  540
HTGLSPAGEK SILKLAQRMA VNFYAGISRS SVRKWDKLLV ANVGEDMRIR TRKNLIDPGE  600
PSGIVLSAAT SVWLPLDPWR LFDFLRDPKC RNQWDILSNG SSMQEMIRLP KGQHQGNCVS  660
VLRTSGIDQA ESTMLILQET WTDASGSLVM YAPVDVSSMN VVMNGGDSAY VALLPSGFSI  720
LPDDGGMMKP ESDGFGGGGS GCLLSIGFQI LVNSLPNARF NVESVGTVNN LISCTIDKIK  780
AALQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555654.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X1
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A1U8NWL90.0A0A1U8NWL9_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_010555654.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]