PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555655.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 763aa    MW: 83996.4 Da    PI: 5.3794
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-2191146156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k ++++++q++eLe+lF+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k
  XP_010555655.1  91 KKKYHRHSPYQIQELESLFKECPHPDEKQRLELSRRLGLEGNQIKFWFQNRRTQMK 146
                     79999************************************************999 PP
2START177.48.5e-562825052206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+k+a+++ p+W k++    e +n de+++ f+ +       +  ea+r++g+v  ++  lve+l+d + +W+e+++     a+t++
  XP_010555655.1 282 LALAAMDELIKLADSNYPLWIKYPnsekEALNHDEYRRVFSGTSCitsagFVAEASRETGLVLSNSLALVETLMDAN-RWTEMFEsivaTASTIK 375
                     6899**********************99999*********55444999999**************************.**********9****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vissg      g lqlm ae+q++splvp R + ++Ry++q+++g w++vdvS d + + p+ +s+v +++lpSg++i++ +ng skvtwveh +
  XP_010555655.1 376 VISSGtggtmdGWLQLMRAEFQVISPLVPtRQVKYLRYCKQQEEGLWAVVDVSSDINGEDPNLQSYVGCRRLPSGCIIQDIGNGCSKVTWVEHSE 470
                     ****************************************************98877777779******************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ +h l+r+l++sg+ +ga +w+ tlqrqce+
  XP_010555655.1 471 YDESNVHRLFRPLLSSGRGFGAERWLVTLQRQCES 505
                     *********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2176148IPR009057Homeodomain-like
SuperFamilySSF466891.88E-2079148IPR009057Homeodomain-like
PROSITE profilePS5007117.50888148IPR001356Homeobox domain
SMARTSM003891.1E-1890152IPR001356Homeobox domain
PfamPF000468.2E-1991146IPR001356Homeobox domain
CDDcd000861.01E-1698148No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084841.878272508IPR002913START domain
SuperFamilySSF559611.13E-31275506No hitNo description
CDDcd088758.51E-112276504No hitNo description
SMARTSM002343.0E-46281505IPR002913START domain
PfamPF018521.1E-48282505IPR002913START domain
SuperFamilySSF559616.32E-17526749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MMSFEGLNCS NSSAVVSATM PSSIVSLPSK GKMNGHGDIG LCGEIFDPTF LERIRDDEYE  60
NRSGSDNLGS VSADDQEAGG GQEHHHPKKK KKKYHRHSPY QIQELESLFK ECPHPDEKQR  120
LELSRRLGLE GNQIKFWFQN RRTQMKTQLE RHENAILREE NEKLIAENNL LKVAMRSPMC  180
NVCGGPAVPG EVTFEQQNLG IENARLKDEL SRVCGLANKF LVGPVSALAG PFPRPSVLDA  240
LYSGFPVGRT GGTGIDFSDG PAPIKPEVGN ELMYERSMFI DLALAAMDEL IKLADSNYPL  300
WIKYPNSEKE ALNHDEYRRV FSGTSCITSA GFVAEASRET GLVLSNSLAL VETLMDANRW  360
TEMFESIVAT ASTIKVISSG TGGTMDGWLQ LMRAEFQVIS PLVPTRQVKY LRYCKQQEEG  420
LWAVVDVSSD INGEDPNLQS YVGCRRLPSG CIIQDIGNGC SKVTWVEHSE YDESNVHRLF  480
RPLLSSGRGF GAERWLVTLQ RQCESFQTIL SSLDDPIDNH TGLSPAGEKS ILKLAQRMAV  540
NFYAGISRSS VRKWDKLLVA NVGEDMRIRT RKNLIDPGEP SGIVLSAATS VWLPLDPWRL  600
FDFLRDPKCR NQWDILSNGS SMQEMIRLPK GQHQGNCVSV LRTSGIDQAE STMLILQETW  660
TDASGSLVMY APVDVSSMNV VMNGGDSAYV ALLPSGFSIL PDDGGMMKPE SDGFGGGGSG  720
CLLSIGFQIL VNSLPNARFN VESVGTVNNL ISCTIDKIKA ALQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555655.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X2
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A1U8NWL90.0A0A1U8NWL9_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_010555654.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]