PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555784.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 206aa    MW: 22802.7 Da    PI: 8.3872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12142187655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  XP_010555784.1 142 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 187
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-10140191No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13141199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9142187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDGETGFSLG RPSGGGYGGN HRRPARPKAE LSFGTADHRS LARISSEVEE TTAINAASSS  60
CMGFGIDNNH RSWDTSSSNI SFAIDQPGKR SKTTDFFTLE TQFSMPQTSL EMGRMESLMN  120
IPEDSVPCKI RAKRGCATHP RSIAERERRT RISGKLKKLQ ELVPNMDKQT SYADMLDLAV  180
EHIKGLQHQV ETLRKDTEKC TCGCMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555784.11e-154PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW811e-83BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A397ZX571e-93A0A397ZX57_BRACM; Uncharacterized protein
TrEMBLM4C7W31e-93M4C7W3_BRARP; Uncharacterized protein
STRINGXP_010555784.11e-154(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.25e-91bHLH family protein