PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556002.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 256aa MW: 27892.1 Da PI: 6.161

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.1e-05	141	180	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++++L++l+ + +K + a++L +A+ YIk Lq XP_010556002.1 141 VRKEKLGEKIATLQQLVSPY-----GKTDTASVLHEAMGYIKFLQ 180 57788899*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.79E-5	125	184	No hit	No description
PROSITE profile	PS50888	11.801	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	134	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0054	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-8	140	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGDTAEEDDG AHAESVSFSQ LLLSDDVVFT TDSSKHRDDS DGDVAGEDAL GFRFSGGDGS 60 GPRMLCFGGE YQNDAELLFT DSPVPSTCNI KNGDKINDDP TMDKSTKSNK KRTEPNMGCD 120 RKPVKKSKRD QNKSSLGKAK VRKEKLGEKI ATLQQLVSPY GKTDTASVLH EAMGYIKFLQ 180 DQVQVLCSPY LIPHSHLTWQ NDGDIVGDQK SKKKDLRSRG LCLVPVSCTV HVANSNGADF 240 WSPVTCHNSL SASMNQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556002.1	0.0	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	4e-88	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A178VI50	6e-87	A0A178VI50_ARATH; Uncharacterized protein
STRING	XP_010556002.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-90	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]