PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556006.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-PHD
Protein Properties Length: 710aa    MW: 79294 Da    PI: 4.7128
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.66e-156116521253
                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     + +L ++F++nryp+ +++e LA++lg+t +qV +WF NrR 
  XP_010556006.1 611 TLRLSKAFQENRYPDVATKENLARELGMTVTQVNNWFRNRRS 652
                     56899************************************7 PP
2PHD40.56.4e-14249304151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+      ++++lCdg C++ fH+ Cl+++l++e++p g   wlC+ C++k
  XP_010556006.1 249 FCAKCGSkdLSRANDIILCDGvCDRGFHQFCLEPPLRKEDIPPGdeGWLCPGCDCK 304
                     6999**9666669*******77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-14239307IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-13246304IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941247304IPR019787Zinc finger, PHD-finger
CDDcd155042.66E-27249301No hitNo description
PfamPF006281.8E-11249304IPR019787Zinc finger, PHD-finger
SMARTSM002491.7E-9249302IPR001965Zinc finger, PHD-type
PROSITE patternPS013590250301IPR019786Zinc finger, PHD-type, conserved site
CDDcd000867.98E-13605651No hitNo description
SMARTSM003891.9E-12606661IPR001356Homeobox domain
SuperFamilySSF466894.71E-14610652IPR009057Homeodomain-like
PfamPF000462.1E-12612652IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-14613652IPR009057Homeodomain-like
PROSITE profilePS5007113.426614657IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MSEQNVDCVP LKTSEPENNV ENPDGLHHDV SNNGVSTVNG VYKTRKGKAI SIHHASEVEP  60
NAFAESGSKS FSTKNSGSRP EIVLGLPSCK QFETQHTRMF RNMRFEKKSH AQRSSMRCGS  120
VVKSGSQEKG KEAVYSAVDE KRKRNMRSKK GKGKEDDEYT RIRRKLRYLL NRINYEQSLI  180
DAYSSEGWKG LSLEKLRPEK ELERATKEIL RCKLRIRELF HHLGSLAAEG KLPESLFDSE  240
GEIDSEDIFC AKCGSKDLSR ANDIILCDGV CDRGFHQFCL EPPLRKEDIP PGDEGWLCPG  300
CDCKVDCIDL LNELLGTEHS INDSWKKIFP ETAAGGDQNL NLGLPSDDSD DDDYAPDGLD  360
DDEKGDDDDD HHHSDDNKEA ESEESSDDSE FTSASDEMVG ASEGVQDRNL STDDSEDENY  420
DPDALNRDPE DENEESSSSD FTSDSEDLGA LLTGDGSCQE DEVTASGEPS RENSQLHGNK  480
EQSVQVSESD SGNEAVRDVP RRRSTERLDY KKLYDEAYGH VPSSSSDDED WGNTARTTDH  540
DSDSEDETTN WNEEDNGSLK QSSHANHTRK REQKSKSVKK SETQITAEEV ANENGSLGEE  600
SKSSSDRKLR TLRLSKAFQE NRYPDVATKE NLARELGMTV TQVNNWFRNR RSSTSTALIK  660
MVSKEDVVKL STSKEAPGET SFTRFSQHAS GTKSGDGKKA PRSRKRRRKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166RIRRKLR
2703707RKRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556006.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_010556007.10.0PREDICTED: homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLR0G2870.0R0G287_9BRAS; Uncharacterized protein
STRINGXP_010556006.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-103Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]