PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556068.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 150aa    MW: 16683.9 Da    PI: 8.6707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.6e-103262347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia+ ++ gRt++++k++w+++
   XP_010556068.1  3 RWSKIASQLP-GRTDNEIKNHWNTH 26
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.632131IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-14342IPR009057Homeodomain-like
SuperFamilySSF466893.67E-9336IPR009057Homeodomain-like
CDDcd001673.50E-7327No hitNo description
PfamPF002491.4E-7326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
FLRWSKIASQ LPGRTDNEIK NHWNTHIKKK LRKMGIDPVT HKPLSEEEAS QPPKPQHSKK  60
KPLKKPQERK NGETQEHQER ESVRLLINHP DKERDLDQMG IGQNAGICVD EVPLMNPDEI  120
LAMPPGCINS NSCGLSSSSS SSSSCASSGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525073.14e-77PREDICTED: uncharacterized protein LOC104802937
TrEMBLR0GVX62e-31R0GVX6_9BRAS; Uncharacterized protein
STRINGXP_010556068.11e-106(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2200124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-33myb domain protein 43