PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556124.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 983aa    MW: 109615 Da    PI: 5.5031
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.31.5e-53121282117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL+++e+++lt +++++p+sgsl+L+n++++++frkDG++w++kkdg++v E+he+LKvg+ e+l+cyYah+e np+fq
  XP_010556124.1  12 YQEaQTRWLKPAEVLFILQSHERYQLTPKAPQKPTSGSLFLFNKRVLKFFRKDGHQWRRKKDGRAVAEAHERLKVGNAEALNCYYAHGELNPSFQ 106
                     56769****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ ++e+ivlvhy++v
  XP_010556124.1 107 RRSYWMLDPAYEHIVLVHYRDV 128
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.0438134IPR005559CG-1 DNA-binding domain
SMARTSM010767.7E-7811129IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4614128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.2E-9422510IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.18E-17424508IPR014756Immunoglobulin E-set
CDDcd001023.57E-6424509No hitNo description
PfamPF018335.7E-9424507IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.3E-14612707IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.796613705IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-15616708IPR020683Ankyrin repeat-containing domain
CDDcd002041.44E-12618705No hitNo description
PfamPF127967.2E-7630706IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.606646678IPR002110Ankyrin repeat
SMARTSM002483.2E-4646675IPR002110Ankyrin repeat
SuperFamilySSF525409.38E-9760869IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001531760782IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.821761789IPR000048IQ motif, EF-hand binding site
SMARTSM000154.5817839IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712818847IPR000048IQ motif, EF-hand binding site
PfamPF006120.021820838IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-4840862IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084841865IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-5843862IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MQQSGYDVNN LYQEAQTRWL KPAEVLFILQ SHERYQLTPK APQKPTSGSL FLFNKRVLKF  60
FRKDGHQWRR KKDGRAVAEA HERLKVGNAE ALNCYYAHGE LNPSFQRRSY WMLDPAYEHI  120
VLVHYRDVSE GKEVSGFCNV NGNFNPGKQS SGQILHFSLN SSSFFSSPSS TGTQNTTHNH  180
YVSDSAEFRQ HSSSPGSAEV SSETVLKSNQ VPTPADSTSS SEFEVRQALR RLEEQLSLGD  240
DNVDSVDPLF CQNENIDNLG FLECRGEIPV SAQTTTVPYQ PESNKLERCY GGYVGNQDHS  300
NNLMLVKNDS GGIEESGDEE TESWKDMLEA CDASLVLNTE EIAHSSERLL PEVEDDSDWN  360
YITQTEPPSY LFPRGHASFE VPAYSSALEA HENNDYGMMG DQGQVGMSLE QEVSLTVAQK  420
QKFTIQEISP EWGYANETTK VIIVGSFLCD PTESTWSCMF GSTEVPLQII KEGVIRCEAP  480
PCPPGKVTLC ITSRNRVSCS QIREFEYRDK ASEYCTKCNI PQTSSTTINP DEQLLLVRFV  540
QMLLPDTQSD KTNNLEPDTD KWSHVIEAIL DGNATSPSTV ERLLQELIRD KLHSWLSSRS  600
QREEEGSLYL SKKEQGIIHM VAGLGFEWAL NPILSHGVGV DFRDINGWSA LHWAARFGRE  660
KMVAALIASG ASPGALTDPS SQDPIGKTAA SIAASNGHKG LAGYLSEVAL TNHLSSLTLE  720
ETEISKGTAE VQAEITVSSI PNPSSEDQLS LKDTLAAVRN SAQAAARIQA AFRAHSFRKR  780
QQREAAMAAC LQEFGIHSGD LQGLSAMSKL AFGNARDYNS AALSIQKKYR GWKGRKDFLA  840
LRHKVVKIQA HVRGYQVRKQ YKVICWAVGI LDKVVLRWRR KGAGLRGFRQ DAESTDESDV  900
EEDILKVFRK QKVDETVNKA FSRVLSMVKS PDAQQQYRRM LERYYQAKAE LGTSEIAASA  960
SGDGDDELFD ISDMLKEDLF MLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556124.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556124.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A087HG820.0A0A087HG82_ARAAL; Uncharacterized protein
STRINGXP_010556124.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]