PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556125.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 970aa    MW: 108265 Da    PI: 5.5032
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.31.4e-53121282117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL+++e+++lt +++++p+sgsl+L+n++++++frkDG++w++kkdg++v E+he+LKvg+ e+l+cyYah+e np+fq
  XP_010556125.1  12 YQEaQTRWLKPAEVLFILQSHERYQLTPKAPQKPTSGSLFLFNKRVLKFFRKDGHQWRRKKDGRAVAEAHERLKVGNAEALNCYYAHGELNPSFQ 106
                     56769****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ ++e+ivlvhy++v
  XP_010556125.1 107 RRSYWMLDPAYEHIVLVHYRDV 128
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.2368134IPR005559CG-1 DNA-binding domain
SMARTSM010767.7E-7811129IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4614128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.1E-9409497IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.16E-17411495IPR014756Immunoglobulin E-set
PfamPF018335.6E-9411494IPR002909IPT domain
CDDcd001023.51E-6411496No hitNo description
Gene3DG3DSA:1.25.40.203.2E-14599694IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.796600692IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-15603695IPR020683Ankyrin repeat-containing domain
CDDcd002041.41E-12605692No hitNo description
PfamPF127967.1E-7617693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.606633665IPR002110Ankyrin repeat
SMARTSM002483.2E-4633662IPR002110Ankyrin repeat
SMARTSM0001531747769IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.91E-9747856IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.821748776IPR000048IQ motif, EF-hand binding site
SMARTSM000154.5804826IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712805834IPR000048IQ motif, EF-hand binding site
PfamPF006120.02807825IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-4827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084828852IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-5830849IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MQQSGYDVNN LYQEAQTRWL KPAEVLFILQ SHERYQLTPK APQKPTSGSL FLFNKRVLKF  60
FRKDGHQWRR KKDGRAVAEA HERLKVGNAE ALNCYYAHGE LNPSFQRRSY WMLDPAYEHI  120
VLVHYRDVSE GKEGKQSSGQ ILHFSLNSSS FFSSPSSTGT QNTTHNHYVS DSAEFRQHSS  180
SPGSAEVSSE TVLKSNQVPT PADSTSSSEF EVRQALRRLE EQLSLGDDNV DSVDPLFCQN  240
ENIDNLGFLE CRGEIPVSAQ TTTVPYQPES NKLERCYGGY VGNQDHSNNL MLVKNDSGGI  300
EESGDEETES WKDMLEACDA SLVLNTEEIA HSSERLLPEV EDDSDWNYIT QTEPPSYLFP  360
RGHASFEVPA YSSALEAHEN NDYGMMGDQG QVGMSLEQEV SLTVAQKQKF TIQEISPEWG  420
YANETTKVII VGSFLCDPTE STWSCMFGST EVPLQIIKEG VIRCEAPPCP PGKVTLCITS  480
RNRVSCSQIR EFEYRDKASE YCTKCNIPQT SSTTINPDEQ LLLVRFVQML LPDTQSDKTN  540
NLEPDTDKWS HVIEAILDGN ATSPSTVERL LQELIRDKLH SWLSSRSQRE EEGSLYLSKK  600
EQGIIHMVAG LGFEWALNPI LSHGVGVDFR DINGWSALHW AARFGREKMV AALIASGASP  660
GALTDPSSQD PIGKTAASIA ASNGHKGLAG YLSEVALTNH LSSLTLEETE ISKGTAEVQA  720
EITVSSIPNP SSEDQLSLKD TLAAVRNSAQ AAARIQAAFR AHSFRKRQQR EAAMAACLQE  780
FGIHSGDLQG LSAMSKLAFG NARDYNSAAL SIQKKYRGWK GRKDFLALRH KVVKIQAHVR  840
GYQVRKQYKV ICWAVGILDK VVLRWRRKGA GLRGFRQDAE STDESDVEED ILKVFRKQKV  900
DETVNKAFSR VLSMVKSPDA QQQYRRMLER YYQAKAELGT SEIAASASGD GDDELFDISD  960
MLKEDLFMLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556125.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556125.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A087HG820.0A0A087HG82_ARAAL; Uncharacterized protein
STRINGXP_010556124.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]