PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556129.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 433aa    MW: 47914.1 Da    PI: 7.3667
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.26.3e-40176252177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC+ dls+ak+yhr+h+vCe hsk+p v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q
  XP_010556129.1 176 RCQVEGCDLDLSSAKDYHRKHRVCESHSKCPRVIVCGLERRFCQQCSRFHALSEFDEKKRSCRKRLSHHNARRRKPQ 252
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-33170238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.744174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37175254IPR004333Transcription factor, SBP-box
PfamPF031105.2E-30177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDCNLRSPMQ WDWENLMMYN SSQTERDKKQ LSIEWEVENG EGIESVVPCF SGFEGVSSGS  60
GTNFWHTALS KSSQSTSVTS SSPEANKTCK LASESIPEDS CSNIEFEQVK ASPAVEVSVG  120
SSAESFLGLK LGKRTYFEDF CGGNNNNDIS AISVKLTPSV AMKKSKSIGQ SMQVPRCQVE  180
GCDLDLSSAK DYHRKHRVCE SHSKCPRVIV CGLERRFCQQ CSRFHALSEF DEKKRSCRKR  240
LSHHNARRRK PQGAYPLNPA KIYERTQQQT NLLWNELRLN TRSEQRYGWG ASYGSRPESG  300
FTLSFERGGH CNGVEEQLFS NSSSSSSHHH QPIHAYSAFQ NTAAAGCFSS GKSTIIGFQL  360
PGKEGYSGGN EAQDLHSALS LLSTKTSESR GTKPPPPPPR HRHAMAHAAA DNDDDDDDPH  420
CHPISDAFPT LFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-251772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556129.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896494e-40AC189649.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556129.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010556130.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010556131.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
SwissprotQ8S9L01e-156SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLA0A1J3I3G61e-161A0A1J3I3G6_NOCCA; Squamosa promoter-binding-like protein 10
STRINGXP_010556129.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-138squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  5. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]