PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556248.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 1259aa    MW: 143406 Da    PI: 7.3587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-169871036255
             AP2    2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55  
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  XP_010556248.1  987 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAEEAACAYDCAARAMRG 1036
                      59*******.**********73....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566725.0E-141134511No hitNo description
Gene3DG3DSA:3.10.10.103.3E-28163250No hitNo description
CDDcd016475.36E-55194318No hitNo description
PfamPF000782.1E-8210281IPR000477Reverse transcriptase domain
Gene3DG3DSA:3.30.420.108.3E-6411554IPR012337Ribonuclease H-like domain
CDDcd092742.24E-55412526No hitNo description
PROSITE profilePS5099420.572674841IPR001584Integrase, catalytic core
SuperFamilySSF530986.37E-38678837IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.105.9E-29686845IPR012337Ribonuclease H-like domain
PfamPF006653.1E-12689798IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.730.102.7E-289871043IPR001471AP2/ERF domain
PfamPF008478.4E-109871036IPR001471AP2/ERF domain
CDDcd000181.62E-279871043No hitNo description
PROSITE profilePS5103221.8529871044IPR001471AP2/ERF domain
SMARTSM003801.6E-319871050IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-209871044IPR016177DNA-binding domain
PRINTSPR003671.9E-8988999IPR001471AP2/ERF domain
PRINTSPR003671.9E-810101026IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0015074Biological ProcessDNA integration
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1259 aa     Download sequence    Send to blast
MPPRCGRPVR LPVREEPPPP EHAPPEFQQQ FFDTMWRQYQ MNMPYQAGAR PEGIPPPPPS  60
GPPGHLAPVV VDYLPLIREL RMMGTPRFEG TQRPEIAEDW LIRISRDLDY GDEAFLVVVT  120
ATQEMEMRLG ETPVVRDFPD VFPEELPGLP PEREVDFCID VIPGTEPVSK TPYRMAPTEM  180
AELKKQLNEL MEKGFIQPSV SPWGAPVLFV KKKDGSMRLC IDYRGLNQVT IKNRYPLPRI  240
DELLDQLQGA QWFSKIDLRS GYHQIGVKAG DVQKTAFRTR HEQHLRLVLQ RLREQKLYAK  300
FSKCAFWLQE VGFLGHVISA QGVQVDQAKI EAVMEWKTPT NATEIHSFLG LAGYYRRFVE  360
GFAKLAKPMT KLTGKNVRFD WTPECEVSFV ELKKRLTTAP ILALPQPGIP YEVYTDASKQ  420
GLGCVLMQEG HVIAYASRQL RKHEENYPTH DLELAAVVHA LKIWRSYLYG EKVKLNTDHK  480
SLTYVISQKD LNLRQRRWIE LIADYDLEIA YHPGKANVVA DALSRKKILS AIQILSSSQE  540
NIVELSAMLG HMEIEEDHDL SLRRRVIEGQ SHDPDLQKII EEISRYGEKG YQIDEEHALR  600
LHQRLCVPAD LELRQDILRE AHQSRLAIHP GASKMYQGLR QWYTWPGIKR DVAEFVAHCL  660
ICQQVKAERQ MPSGKLQPLE IPEWKWDSIA MDFVVGLPTT PAKKNAIWVV VDRLTKSAHF  720
IPIRQEYTVE KLAHIYIDEI VRLHGVPSEI VSDRDPRFTA RLWGALQSAM GTQLRMSTAY  780
HPQTDGQSER TIQTLEDMLR ACILEWGVPW DRYLTLCEFA YNNSYHASIG MPPYEALYGR  840
SCKTPLCWTE IGERRIFGPE IVEETTEVIR KIKVNLKVAQ DRQKSYADRR RRDFTVEVGD  900
LVFLRVQAIR GYTRFGKTGK LKPRYIGPYP VIAKVGAVAY RLDLPPELGR IHDVFHVSML  960
RKYIADPSHI LQPQEIELTS SGGSSMRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA  1020
EEAACAYDCA ARAMRGIKAR TNFVYPILPP PPPPPPLEPL RHRMFLPPPS PANMFLLGDV  1080
ITSSQSLCRV SNLQNDVVNV VHGTLTGTVA KSEDDLTHKA KKMNTENDKN SVTPFFEPEP  1140
LGSGLLEEIV QGFLPKPSSE EASVPPLPKT SLGHNNQPSM VDVFPSPESS FPANICSLNG  1200
GKWENAEEND GFPGNHHQSV DCVQRGEFGW VDSGIAATLD RNGCVGMCWN HYPYCFHDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A5e-6914352543475Reverse transcriptase/ribonuclease H
4ol8_B5e-6914352543475Reverse transcriptase/ribonuclease H
4ol8_E5e-6914352543475Reverse transcriptase/ribonuclease H
4ol8_F5e-6914352543475Reverse transcriptase/ribonuclease H
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1887892DRRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019059514.10.0PREDICTED: uncharacterized protein LOC104825588
TrEMBLA0A2N9GYN90.0A0A2N9GYN9_FAGSY; Uncharacterized protein
STRINGXP_010556248.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-35DORNROSCHEN-like