PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556381.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 352aa MW: 39391.6 Da PI: 5.1376

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	199	254	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_010556381.1 199 KQRRCWSQDLHRRFLNALQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 254 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.611	196	256	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-16	197	257	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	197	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-28	199	254	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	201	252	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MIKNIKNMDY SQNHKRFGEY IEALQEERRK ILVFQRELPL CLELVTQAIE ACKRETSDTM 60 ENMNGQSECS EQSTGDCGGL VLEEFIPIKP SFSSAHDDDD DEEEEEDEAE EEEDSDEHDD 120 DKNPKSDWLK SVQLWNQPDT IPIEERSREK ETVVEVKNNG VMCEKSNVDV ESRKTPATAD 180 GGGGGRKNEA VKDAGGKRKQ RRCWSQDLHR RFLNALQQLG GAQVATPKQI RELMKVDGLT 240 NDEVKSHLQK YRLHTRRPSQ TAGNGGNNQT PHFVVVGGIW VPQATAKSAA ATSATAGIYG 300 DMADPAPPQW PSHWNNFGPL ISHERSICHI EGGVRRIPPA MSSSSPKDRK KS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MIKNIKNMDY SQNHKRFGEY IEALQEERRK ILVFQRELPL CLELVTQAIE ACKRETSDTM  60
ENMNGQSECS EQSTGDCGGL VLEEFIPIKP SFSSAHDDDD DEEEEEDEAE EEEDSDEHDD  120
DKNPKSDWLK SVQLWNQPDT IPIEERSREK ETVVEVKNNG VMCEKSNVDV ESRKTPATAD  180
GGGGGRKNEA VKDAGGKRKQ RRCWSQDLHR RFLNALQQLG GAQVATPKQI RELMKVDGLT  240
NDEVKSHLQK YRLHTRRPSQ TAGNGGNNQT PHFVVVGGIW VPQATAKSAA ATSATAGIYG  300
DMADPAPPQW PSHWNNFGPL ISHERSICHI EGGVRRIPPA MSSSSPKDRK KS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556381.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556381.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FX67	1e-121	HRS1_ARATH; Transcription factor HRS1
TrEMBL	V4L6X8	1e-125	V4L6X8_EUTSA; Uncharacterized protein
STRING	XP_010556381.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	1e-117	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]