PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556387.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 293aa MW: 32905.1 Da PI: 7.8626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	4.8e-13	108	154	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L +++++ k+L XP_010556387.1 108 KSHSEAERRRRERINNHLSKLRSILPNT-----TKTDKASLLAEVIQHTKEL 154 79***********************9.....8**********998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.609	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	108	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-14	109	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-14	109	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-12	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.28E-4	118	157	No hit	No description
Gene3D	G3DSA:3.30.70.260	6.5E-5	192	244	No hit	No description
CDD	cd04873	4.88E-10	192	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MYSMRGEDCF RSLHNIQEYQ NQPTLPWTRP SFYPAMSSFG YSDLTRRDGF GSPIPSMDHH 60 HNHLQFLSEA LGPNMRPGSG LGWVGFGGEM GQMTAREIMD VKALAASKSH SEAERRRRER 120 INNHLSKLRS ILPNTTKTDK ASLLAEVIQH TKELKQQTSL IADTCPIPTE TDELTVDFSY 180 DDGDGNFVIK ASFCCQDRAD LMNDVIKALK ELRLQTRKAE ITTVGSRVKN VLFISGEETR 240 ADDEQKIYNR VSLIQAALKA VIEKCVPGDS NSDQSSLGGA KRQRTNNITN RCY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	ERRRRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269\|PubMed:20220754}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556387.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556387.1	0.0	PREDICTED: transcription factor AIG1-like
Swissprot	Q9LS08	1e-111	BH032_ARATH; Transcription factor AIG1
TrEMBL	V4KSD4	1e-111	V4KSD4_EUTSA; Uncharacterized protein
STRING	XP_010556387.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13949	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	1e-106	basic helix-loop-helix 32

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Jost R, et al. Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. J. Exp. Bot., 2015. 66(9): p. 2501-14 [PMID:25697796] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]