PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556439.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 192aa    MW: 21147.2 Da    PI: 9.3847
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.52e-282103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C ++Cvl+ ++     p++q + + +++k+FG+s + ++++a+p+ +r+d+++sl+yeA+ r+ +Pv G+vg++l+++++l+++
  XP_010556439.1   2 SCNGCRVLRKGCREGCVLRTCLqwiasPEAQGHVTLFLAKFFGRSDLFSFISAVPQPQRPDLIKSLLYEACGRTVNPVDGVVGLLLSGKWRLCEE 96 
                     6*************************9******************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_010556439.1  97 AVETVLA 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5031107IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSCNGCRVLR KGCREGCVLR TCLQWIASPE AQGHVTLFLA KFFGRSDLFS FISAVPQPQR  60
PDLIKSLLYE ACGRTVNPVD GVVGLLLSGK WRLCEEAVET VLAGGVLKPP YDGSPAEKDS  120
GGWIHHRRMG KRRGRAKSGF RGLGRDYTAS CWKEEKVSSS STTATSFESG GEDDRRRRGY  180
AGEETKLLNL FV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556439.11e-139PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN236e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLW9SE373e-60W9SE37_9ROSA; Uncharacterized protein
STRINGXP_010556439.11e-139(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-55LOB domain-containing protein 38