PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556598.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 593aa    MW: 65507.5 Da    PI: 7.1974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13436481454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  XP_010556598.1 436 NHVEAERQRREKLNQRFYALRTVVPNiS------KMDKASLLGDAVAYINEL 481
                     799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-5148236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.901432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-14435486No hitNo description
SuperFamilySSF474591.57E-17435496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10436481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17436493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MNIGCVVWNE DDKDIVGSLL GKRGLDYLLS NSVSNENHLM TMASDENLQD KLSDLVERPN  60
ASNFSWNYAI FWQISRSKTG DSVLCWGDGS CREPKEGEES EIIRILSIGR EEETQQRIRK  120
RVLQKLHTFF GGSEEENYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FVSGKPVWLS  180
DVLKSCSDYC VRSFLAKSAG IRTVVLVPTD VGVVELGSMR SLPESHESTQ SIRSLFSSKL  240
THQMVPAIFP QKKDENRILG IGLSNLGVLE RVGGAPKNSG KDLHNLGHIQ HGHNHNQQRQ  300
FREKLAIRKT DDRVPRTPEA YPNGGKLMFS NPPTNTVLSP SWAQTDIYGS LAVSSTPTTA  360
AQATNGKDVP SGDDFRFLPL QPQRPAQIQI DFSGASSRAS DNSDGEGTEW PDIGDDGSRP  420
RKRGRKPANG RAEALNHVEA ERQRREKLNQ RFYALRTVVP NISKMDKASL LGDAVAYINE  480
LHAKLKVMEA ERETSGYSSK PPISREAKIN VQASGEDVTV RVNCPLDSHP ASGILHAFEE  540
SQATVIDSKL EVGQDTVLHT FVIKPGELTK EKLVSAFSRE PSSSLQSRSS SGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25430492264Transcription factor MYC2
5gnj_B3e-25430492264Transcription factor MYC2
5gnj_E3e-25430492264Transcription factor MYC2
5gnj_F3e-25430492264Transcription factor MYC2
5gnj_G3e-25430492264Transcription factor MYC2
5gnj_I3e-25430492264Transcription factor MYC2
5gnj_M3e-25430492264Transcription factor MYC2
5gnj_N3e-25430492264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556598.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556598.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A178WJW50.0A0A178WJW5_ARATH; JAM2
STRINGXP_010556598.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]