PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556617.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 439aa    MW: 48375.2 Da    PI: 5.6274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11273318454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR ++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  XP_010556617.1 273 NHVEAERQRRVKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 318
                     799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-3727189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.164269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-14272323No hitNo description
Gene3DG3DSA:4.10.280.105.6E-16273331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-14275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDELRVSPSS STSLVTVTEE PPATGSLQQK LRSVIETSSP DRWAYVIFWQ KLSDDQSGRC  60
FLAWGDGHFR GVHNHKSHQN LTNDNMECEA AVDGGDSVCD LEWFYVMSLT SSFHDGDESP  120
RKDFTGGSLL WLTGADDLRL HDCDRAKEAS LHGVQTFVSV PLRNSIIELG SPDKIPQNWS  180
LVNLVRSLFG SDPPEIPLTK PPPLDSLGRY VSFADMGITT ALLQGQKTRT GSGPSPGRPP  240
LLLTDSEYSD FDGIFQGNKR RKKLGTPAAV PVNHVEAERQ RRVKLNHRFY ALRAVVPNVS  300
RMDKASLLSD AVSYINELKA RIEELETQLQ TQTQSPSCSN NNNNNQSNTT SSEAGGVIPG  360
AEVQVKMVGD EAVVRVQSEN VNHPTAALMG ALREMECRVI HASASRVNDL MVQDAVVWVP  420
IGLRSEDSLR TELVRKLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-24261898192Transcription factor MYC3
4rqw_B5e-24261898192Transcription factor MYC3
4rs9_A5e-24261898192Transcription factor MYC3
4yz6_A5e-24261898192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556617.10.0PREDICTED: transcription factor bHLH14
SwissprotO230901e-119BH014_ARATH; Transcription factor bHLH14
TrEMBLA0A1J3CRL81e-127A0A1J3CRL8_NOCCA; Transcription factor bHLH14
STRINGXP_010556617.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-111bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]