PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556634.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 341aa    MW: 38186.5 Da    PI: 6.1913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14160211155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ L+ l+P++   + ++ + a+i+  A+++Ik+L+
  XP_010556634.1 160 QRMTHIAIERNRRRQMNEHLNSLKCLMPQS---YLQRGDQASIVGGAIDFIKELE 211
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-11158215No hitNo description
SuperFamilySSF474596.54E-16159229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14160226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-9165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MFCSNGEPPL SPIDSCLMDD HFAAVDWSQH GLLPSNGSLR FNEEEEEEAQ VQFSDDTAIE  60
DKIPFLQMLR RVEPTAFLPF RSEPNLVQSL LQIQTLELES CLTLETTIPH NDKPFKLGSL  120
SPSPSPTPSL AVPLANESVK QGRKRKRTRT PKNKEEVESQ RMTHIAIERN RRRQMNEHLN  180
SLKCLMPQSY LQRGDQASIV GGAIDFIKEL EQLLHSLEAE KRDVEKDKTV SCRACSSSSV  240
LIGSTPDGEV SAGRSAVEVE ATVVQNHVSL KVRCKRRRGQ ILRAIVSLEE LKLTILHLSI  300
TSSLDFVFYS FNLKMEDDCK LGPADEITAA VHQIFKHING G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160171RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556634.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556634.10.0PREDICTED: transcription factor bHLH57 isoform X1
SwissprotQ9M1281e-102BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A1J3J7T11e-101A0A1J3J7T1_NOCCA; Transcription factor bHLH57
STRINGXP_010556634.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.15e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]