PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556635.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 324aa    MW: 36394.4 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14143194155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ L+ l+P++   + ++ + a+i+  A+++Ik+L+
  XP_010556635.1 143 QRMTHIAIERNRRRQMNEHLNSLKCLMPQS---YLQRGDQASIVGGAIDFIKELE 194
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.16E-11141198No hitNo description
PROSITE profilePS5088815.046142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16142212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14143209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-9148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDDHFAAVDW SQHGLLPSNG SLRFNEEEEE EAQVQFSDDT AIEDKIPFLQ MLRRVEPTAF  60
LPFRSEPNLV QSLLQIQTLE LESCLTLETT IPHNDKPFKL GSLSPSPSPT PSLAVPLANE  120
SVKQGRKRKR TRTPKNKEEV ESQRMTHIAI ERNRRRQMNE HLNSLKCLMP QSYLQRGDQA  180
SIVGGAIDFI KELEQLLHSL EAEKRDVEKD KTVSCRACSS SSVLIGSTPD GEVSAGRSAV  240
EVEATVVQNH VSLKVRCKRR RGQILRAIVS LEELKLTILH LSITSSLDFV FYSFNLKMED  300
DCKLGPADEI TAAVHQIFKH INGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143154RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556635.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556635.10.0PREDICTED: transcription factor bHLH57 isoform X2
SwissprotQ9M1281e-103BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A1J3J7T11e-101A0A1J3J7T1_NOCCA; Transcription factor bHLH57
STRINGXP_010556634.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.12e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]