PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556851.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 461aa    MW: 50625.8 Da    PI: 8.7148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-056181323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_010556851.1 61 CEICGKGFQRDQNLQLHRRGH 81
                    *******************88 PP
2zf-C2H212.90.00033135157123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010556851.1 135 WKCDKCSKRYAVQSDWKAHSKTC 157
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.64E-75881No hitNo description
Gene3DG3DSA:3.30.160.604.0E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0765981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355250100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.64E-7130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MTAEETISYG VVQSSSSTLD HEPTNTPAVK KKRNLPGNPD PEAEVIALSP KTLMATNRFL  60
CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TTKEVRKRVY VCPEKTCVHN HPSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR EYRCNCGTIF SRRDSFITHR  180
AFCDALAEET ARLNAASHLN SLTAAAEATA GNLNYQYLMG RLSPPPPPFG PPHPTITITS  240
MSQHHFPASL SLWMGSHHQD FDDRNQMPPP LQPPDHDWVF GTANAKSCAS TNHDGFTTMN  300
GNISSGNDHK SASLFVPSLF SDQTQAADAT ISAANMSATA LLQKAAQIGA TSTDPSAFLH  360
SFALKTTDQI TNHQNGEDGG EKFFALFGSN NVGMGNLGGD HEVGNPRNGG VTVSALEESQ  420
IYPWKRRRLQ NGEITVGGQT RDFLGVGVQS MCHPSSINGW M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35131200372Zinc finger protein JACKDAW
5b3h_F7e-35131200372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424428KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556851.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556851.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9FFH30.0IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLD7MN230.0D7MN23_ARALL; Zinc finger family protein
STRINGXP_010556851.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]