PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557112.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 235aa    MW: 26894.9 Da    PI: 4.7839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1990140255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +l+g
  XP_010557112.1  90 SYRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFALKG 140
                     69*******.**********44465..**********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-3089149No hitNo description
PfamPF008474.3E-1390140IPR001471AP2/ERF domain
SMARTSM003801.3E-3790154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2990149IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2290150IPR016177DNA-binding domain
PROSITE profilePS5103222.87990148IPR001471AP2/ERF domain
PRINTSPR003671.3E-1091102IPR001471AP2/ERF domain
PRINTSPR003671.3E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVFPNYQSQD FSPESSSSGS WSSQESSFFW SDEFFDREPE FFFPNPNYYQ EINLKNEEET  60
LVMVIKGEEN GETLSNPETV SRDPKEEEKS YRGVRRRPWG KYAAEIRDST RNGIRVWLGT  120
FDSAEEAALA YDQAAFALKG VLAVLNFPVE TVRESLQNMK NVDLSDGGSP VMALKRKHSL  180
RNRPKGKRRR SSSSSLQMRK ETIKEEEISR SSSTLVVLED LGPEYLEQLL MSSCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2881150574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174189KRKHSLRNRPKGKRRR
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557112.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557112.11e-172PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM02e-74ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078FRC81e-73A0A078FRC8_BRANA; BnaC04g42060D protein
TrEMBLA0A0D3C3D61e-73A0A0D3C3D6_BRAOL; Uncharacterized protein
STRINGXP_010557112.11e-172(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-61ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]