PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557165.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 350aa    MW: 39107.3 Da    PI: 10.1177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32285343360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+k
  XP_010557165.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGDHNHPK 343
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-34271343IPR003657WRKY domain
PROSITE profilePS5081130.446278344IPR003657WRKY domain
SuperFamilySSF1182902.35E-27281343IPR003657WRKY domain
SMARTSM007741.3E-38283343IPR003657WRKY domain
PfamPF031062.7E-27285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEEIEEANKA AVESCHRVLS LVCRAQQDQG YDRSLVSETE DAVFRFKRVG SLLSRSVGHA  60
RVRRAKKLQT HLSQTIFLDP CHLKTEPPSM KSPFLRSGFH ELSLRPSDSL SLGNPSFGLS  120
SNSKGPLLQL TQQAIPSMNY HNLLHKQHQH QQQQLHERLQ AHQQQQKHQA EILLRKCNGG  180
MSLSFDNSSC TPTMSSTRSF VSSLSIDGSV ANAEGKNSFH LIGGPSSTDH NSQPLKRKCS  240
GKEGEGSFKC GSSSRCHCSK KRKHRVKRSI KVPAISNKVA DIPPDDYSWR KYGQKPIKGS  300
PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGDHN HPKMSSQSVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19276341771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557165.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557165.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-170WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGXP_010557165.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-88WRKY DNA-binding protein 21