PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557306.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 253aa    MW: 27980 Da    PI: 7.9264
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.6e-393695261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +e+alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++s
  XP_010557306.1 36 PEQALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKTRRS 95
                    7899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-283594IPR003851Zinc finger, Dof-type
PfamPF027011.4E-333894IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3114094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDPSRVATQE MYNQTQETMY NKINEKDHQK KQRAQPEQAL KCPRCESTNT KFCYYNNYSL  60
SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KTRRSPPLPP PASSKNVIRP LPSFRDDPLT  120
NPLTTGLPSL CYDDATDLNV VFSRLQQKQS SFGPSEVSIF GNSADRRCDV FGNPAGFFGG  180
QNCNFGGGLG YGFVTGADDE HHSSNETSST SMAMTFEENN TQETSIGGNN ESPNKDILLG  240
FPWHLTGEVP GGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557306.10.0PREDICTED: dof zinc finger protein DOF2.1-like
SwissprotQ8LE431e-54DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A397ZUY82e-59A0A397ZUY8_BRACM; Uncharacterized protein
STRINGXP_010557306.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.14e-45Dof family protein