PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557308.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 212aa MW: 23344.3 Da PI: 4.7976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	7.8e-42	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_010557308.1 40 PCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQDLPESQRADAVNSMVYEAGARIRDPVYGSAGAIYHLQRQVSELQAQLA 134 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_010557308.1 135 KAQVE 139 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.898	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-41	40	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MLKMEINGDT ATPSPPSNIS SPPFPASPQS QSQTQVVMSP CAACKILRRR CAEKCVLAPY 60 FPPTEPTKFT IAHRVFGASN IIKFLQDLPE SQRADAVNSM VYEAGARIRD PVYGSAGAIY 120 HLQRQVSELQ AQLAKAQVEL VSVQLQRANL LALLCNQPNV QDQLGPYNHL SSSFESGDDF 180 ISSPDEESND LGYFLDDNTN SSMSWWDHPL LT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-40	39	141	10	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-40	39	141	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557308.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557308.1	1e-158	PREDICTED: LOB domain-containing protein 11-like isoform X2
Swissprot	Q9SK08	4e-98	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1J3HWR6	2e-92	A0A1J3HWR6_NOCCA; LOB domain-containing protein 11 (Fragment)
STRING	XP_010557308.1	1e-157	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-97	LOB domain-containing protein 11