PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557354.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 258aa    MW: 29550.3 Da    PI: 7.587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
   XP_010557354.1 13 RGLWSPEEDEKLLRYITSHGHSSWSSVPKLAGLERCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding57.14.2e-1866109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_010557354.1  66 RGSFTAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.37860IPR017930Myb domain
SuperFamilySSF466891.12E-2910107IPR009057Homeodomain-like
SMARTSM007171.1E-121262IPR001005SANT/Myb domain
PfamPF002493.1E-151360IPR001005SANT/Myb domain
CDDcd001671.25E-101660No hitNo description
PROSITE profilePS5129427.0761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2664115IPR009057Homeodomain-like
SMARTSM007171.7E-1665113IPR001005SANT/Myb domain
PfamPF002492.7E-1666109IPR001005SANT/Myb domain
CDDcd001671.03E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLLRYITS HGHSSWSSVP KLAGLERCGK SCRLRWINYL  60
RPDLRRGSFT AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPRTHNLMPS HKRASSLPSN DNKAKAKHHR PLDDHETFSI IKDSPSIKIK PSLPTTMNNP  180
PTYDSSSIML GLFDESYPDS WDVAFGRQFQ EDPIPVERGD TIDDQSQTLD VTNMDVSFDC  240
STFDPDFAAL FSSMEWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557354.10.0PREDICTED: myb-related protein Hv33
TrEMBLD7L0J71e-100D7L0J7_ARALL; Uncharacterized protein
STRINGXP_010557354.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-95myb domain protein 67