PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557419.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 172aa    MW: 19218.2 Da    PI: 4.6458
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB47.73.8e-159102694
           NF-YB   6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     ++lP a v r+mk  l +     +  i k+a     e +  fi ++++ a+d c++ kr+t+n++d+l al ++ f ++veplk+ l+++++ +
  XP_010557419.1   9 EELPRAIVRRVMKDKLSEcspdyDVSIHKEALLAFAESARVFIHYLSATANDLCKESKRQTMNANDVLKALEEIDFPEFVEPLKTSLEEFKQKN 102
                     579**********999652222356899************************************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-337146IPR009072Histone-fold
PfamPF008082.6E-101079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.86E-2511127IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MESEKVVAEE LPRAIVRRVM KDKLSECSPD YDVSIHKEAL LAFAESARVF IHYLSATAND  60
LCKESKRQTM NANDVLKALE EIDFPEFVEP LKTSLEEFKQ KNAGKKSGGG GGSKPKETKK  120
RKQEESSLQN GRRKSKPGKE KEENDDHNMD ENGNEDGDNI SGEEEDGDEA EA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557419.11e-122PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A087GRQ98e-63A0A087GRQ9_ARAAL; Uncharacterized protein
TrEMBLA0A178VZ114e-62A0A178VZ11_ARATH; NF-YB11
TrEMBLD7LHL12e-62D7LHL1_ARALL; Uncharacterized protein
STRINGXP_010557419.11e-122(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-55nuclear factor Y, subunit B11