PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557433.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 394aa MW: 44877 Da PI: 5.15

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.4	2.4e-48	46	171	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF+Ptd el+++yL++k++g++ ++ vi+evdiy++ePwdLp k++ ++e ew+fF+ r ++y++g++++rat gyWkatgk+++v+ XP_010557433.1 46 YPGFRFSPTDVELICYYLRRKIAGEERSV-AVIPEVDIYNYEPWDLPdKSILKSEGEWFFFCARGRRYPHGSQSRRATGLGYWKATGKERNVKM- 138 79**********************999.89***********777777888*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+k+tLvf+ grap+g +t+W+mhey l XP_010557433.1 139 GTQVVGTKRTLVFHIGRAPRGDRTEWIMHEYCL 171 99***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-55	34	186	IPR003441	NAC domain
PROSITE profile	PS51005	52.275	45	187	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	47	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MGMYDECTSR QSKFSSKAFF FLEKKKSLAG EMSRETEMSI AVSELYPGFR FSPTDVELIC 60 YYLRRKIAGE ERSVAVIPEV DIYNYEPWDL PDKSILKSEG EWFFFCARGR RYPHGSQSRR 120 ATGLGYWKAT GKERNVKMGT QVVGTKRTLV FHIGRAPRGD RTEWIMHEYC LIGAPPEALV 180 VCRLRKNCDF RANNNSGKKQ MQDADCDDHS NMSNDCFHHT DGGASEGENK NTDSFSASAS 240 EWKLWNDTNA ESSNNANDHI DEEDCEDCDE EDDDDCYAEI LKDDIVELDE TTKPTSKPSK 300 ASQALKSNLT RQKTLYTDAS SSGCNESSKC GSETEWNGMT RCLLSFRDHN IDCWRFQDFG 360 RKKNFDGWRL KGVFWAVALF LVLMISVVWA AFSG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MGMYDECTSR QSKFSSKAFF FLEKKKSLAG EMSRETEMSI AVSELYPGFR FSPTDVELIC  60
YYLRRKIAGE ERSVAVIPEV DIYNYEPWDL PDKSILKSEG EWFFFCARGR RYPHGSQSRR  120
ATGLGYWKAT GKERNVKMGT QVVGTKRTLV FHIGRAPRGD RTEWIMHEYC LIGAPPEALV  180
VCRLRKNCDF RANNNSGKKQ MQDADCDDHS NMSNDCFHHT DGGASEGENK NTDSFSASAS  240
EWKLWNDTNA ESSNNANDHI DEEDCEDCDE EDDDDCYAEI LKDDIVELDE TTKPTSKPSK  300
ASQALKSNLT RQKTLYTDAS SSGCNESSKC GSETEWNGMT RCLLSFRDHN IDCWRFQDFG  360
RKKNFDGWRL KGVFWAVALF LVLMISVVWA AFSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	45	172	17	143	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	45	172	17	143	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	45	172	17	143	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	45	172	17	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	45	172	20	146	NAC domain-containing protein 19
3swm_B	2e-42	45	172	20	146	NAC domain-containing protein 19
3swm_C	2e-42	45	172	20	146	NAC domain-containing protein 19
3swm_D	2e-42	45	172	20	146	NAC domain-containing protein 19
3swp_A	2e-42	45	172	20	146	NAC domain-containing protein 19
3swp_B	2e-42	45	172	20	146	NAC domain-containing protein 19
3swp_C	2e-42	45	172	20	146	NAC domain-containing protein 19
3swp_D	2e-42	45	172	20	146	NAC domain-containing protein 19
4dul_A	2e-42	45	172	17	143	NAC domain-containing protein 19
4dul_B	2e-42	45	172	17	143	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557433.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557433.1	0.0	PREDICTED: NAC domain-containing protein 40 isoform X1
Swissprot	Q9XIN7	1e-118	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	R0HQ77	1e-124	R0HQ77_9BRAS; Uncharacterized protein
STRING	XP_010557433.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-115	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]