PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557447.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 189aa MW: 21081.9 Da PI: 9.1197

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	240.7	3.1e-74	2	165	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++ sse+vCyv CnfCntilav+vP++slf++vtvrCGhCt+lls+n+ + ++++ h +++l+ ++++++s ++++e+ s+s+ XP_010557447.1 2 SMELSSERVCYVSCNFCNTILAVNVPYASLFTIVTVRCGHCTNLLSLNMGASLHQITPPAH---------QQDLQLHKQHITSPETRKECGSSSK 87 56789*********************************************999999888.........4444444444444444444433333 PP YABBY 97 ssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++ e+ ++e+pr+pp+ PPekrqr PsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl XP_010557447.1 88 STTSSttssFESVEREAPRMPPIRPPPEKRQRLPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 165 3322212214677899**999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.8E-72	6	165	IPR006780	YABBY protein
SuperFamily	SSF47095	8.9E-8	110	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	114	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSMELSSERV CYVSCNFCNT ILAVNVPYAS LFTIVTVRCG HCTNLLSLNM GASLHQITPP 60 AHQQDLQLHK QHITSPETRK ECGSSSKSTT SSTTSSFESV EREAPRMPPI RPPPEKRQRL 120 PSAYNRFIKE EIQRIKASNP EISHREAFST AAKNWAHFPH IHFGLKLDGN KQGKQLDQAV 180 AGQKSSGYC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557447.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557447.1	1e-141	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-106	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J3F0Q6	1e-110	A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2
STRING	XP_010557447.1	1e-140	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-86	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]