PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557509.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 476aa    MW: 53773.4 Da    PI: 6.57
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS490.95.9e-150524731374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+l++a+++L++ls+l+spdgd+mqR+aayfteAL++r+++s+++lykal++++ +  n+see+ a+klf+e++P+lk+s+
  XP_010557509.1  52 LIHLLLTCANHVTSGSLQNANSALEQLSHLSSPDGDTMQRIAAYFTEALSTRILKSWPGLYKALNATRMR--NVSEEIYARKLFFEMFPVLKVSY 144
                     689*************************************************************999998..7********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI+ea+ege++vH+iD+ +s+++QW+aL+q+++sRpegpp+lRiT v++    +k  l ++++rL++ Ae+l++pf+fn+ v++rle+l+
  XP_010557509.1 145 LLTNQAIVEAMEGEKMVHVIDLHASEPAQWIALIQSFNSRPEGPPHLRITSVHQ----QKGVLDQMAHRLTEEAEKLDIPFQFNP-VVSRLESLN 234
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles.erdevLkl 230
                     +++Lrvk+gEala+++vlqlh ll                                                      ++s +l+s + d++L++
  XP_010557509.1 235 VDQLRVKTGEALAISSVLQLHCLLasddeflrkncpsrfknpngtdlqrvllmnpnsagevtdndiisnngyspsgdsASSFPLSSgKMDRFLHA 329
                     ****************************************************************************9988888888789****** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     ++slsPk++vv+eq++dhn++s++er+le+l++y alfd+le+klpr+s+erikvE++l+g+ei+n++aceg er+erhe+lekW++r++ aGF+
  XP_010557509.1 330 LWSLSPKLMVVTEQDSDHNGTSLMERLLESLYTYGALFDCLESKLPRTSQERIKVEKMLFGEEIKNIIACEGCERTERHERLEKWSQRFDLAGFG 424
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vpls + + qa++ll+ ++ +gyr++ee+g++ ++W+drpL+svS+Wr
  XP_010557509.1 425 NVPLSCYSMLQARRLLQSYGCEGYRIKEENGCAAICWQDRPLYSVSSWR 473
                     ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.1626453IPR005202Transcription factor GRAS
PfamPF035142.1E-14752473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVTMFQEDGT SSVASSPLQV FSMMPLHRTN LAGPSPYPWL KDLKPEERGL YLIHLLLTCA  60
NHVTSGSLQN ANSALEQLSH LSSPDGDTMQ RIAAYFTEAL STRILKSWPG LYKALNATRM  120
RNVSEEIYAR KLFFEMFPVL KVSYLLTNQA IVEAMEGEKM VHVIDLHASE PAQWIALIQS  180
FNSRPEGPPH LRITSVHQQK GVLDQMAHRL TEEAEKLDIP FQFNPVVSRL ESLNVDQLRV  240
KTGEALAISS VLQLHCLLAS DDEFLRKNCP SRFKNPNGTD LQRVLLMNPN SAGEVTDNDI  300
ISNNGYSPSG DSASSFPLSS GKMDRFLHAL WSLSPKLMVV TEQDSDHNGT SLMERLLESL  360
YTYGALFDCL ESKLPRTSQE RIKVEKMLFG EEIKNIIACE GCERTERHER LEKWSQRFDL  420
AGFGNVPLSC YSMLQARRLL QSYGCEGYRI KEENGCAAIC WQDRPLYSVS SWRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-55354751380Protein SCARECROW
5b3h_D9e-55354751380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557509.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_010557510.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4JY520.0V4JY52_EUTSA; Uncharacterized protein
STRINGXP_010557509.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]