PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557511.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 454aa    MW: 51442.8 Da    PI: 6.8265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS491.15e-150304511374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+l++a+++L++ls+l+spdgd+mqR+aayfteAL++r+++s+++lykal++++ +  n+see+ a+klf+e++P+lk+s+
  XP_010557511.1  30 LIHLLLTCANHVTSGSLQNANSALEQLSHLSSPDGDTMQRIAAYFTEALSTRILKSWPGLYKALNATRMR--NVSEEIYARKLFFEMFPVLKVSY 122
                     689*************************************************************999998..7********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI+ea+ege++vH+iD+ +s+++QW+aL+q+++sRpegpp+lRiT v++    +k  l ++++rL++ Ae+l++pf+fn+ v++rle+l+
  XP_010557511.1 123 LLTNQAIVEAMEGEKMVHVIDLHASEPAQWIALIQSFNSRPEGPPHLRITSVHQ----QKGVLDQMAHRLTEEAEKLDIPFQFNP-VVSRLESLN 212
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles.erdevLkl 230
                     +++Lrvk+gEala+++vlqlh ll                                                      ++s +l+s + d++L++
  XP_010557511.1 213 VDQLRVKTGEALAISSVLQLHCLLasddeflrkncpsrfknpngtdlqrvllmnpnsagevtdndiisnngyspsgdsASSFPLSSgKMDRFLHA 307
                     ****************************************************************************9988888888789****** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     ++slsPk++vv+eq++dhn++s++er+le+l++y alfd+le+klpr+s+erikvE++l+g+ei+n++aceg er+erhe+lekW++r++ aGF+
  XP_010557511.1 308 LWSLSPKLMVVTEQDSDHNGTSLMERLLESLYTYGALFDCLESKLPRTSQERIKVEKMLFGEEIKNIIACEGCERTERHERLEKWSQRFDLAGFG 402
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vpls + + qa++ll+ ++ +gyr++ee+g++ ++W+drpL+svS+Wr
  XP_010557511.1 403 NVPLSCYSMLQARRLLQSYGCEGYRIKEENGCAAICWQDRPLYSVSSWR 451
                     ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.164431IPR005202Transcription factor GRAS
PfamPF035141.7E-14730451IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MMPLHRTNLA GPSPYPWLKD LKPEERGLYL IHLLLTCANH VTSGSLQNAN SALEQLSHLS  60
SPDGDTMQRI AAYFTEALST RILKSWPGLY KALNATRMRN VSEEIYARKL FFEMFPVLKV  120
SYLLTNQAIV EAMEGEKMVH VIDLHASEPA QWIALIQSFN SRPEGPPHLR ITSVHQQKGV  180
LDQMAHRLTE EAEKLDIPFQ FNPVVSRLES LNVDQLRVKT GEALAISSVL QLHCLLASDD  240
EFLRKNCPSR FKNPNGTDLQ RVLLMNPNSA GEVTDNDIIS NNGYSPSGDS ASSFPLSSGK  300
MDRFLHALWS LSPKLMVVTE QDSDHNGTSL MERLLESLYT YGALFDCLES KLPRTSQERI  360
KVEKMLFGEE IKNIIACEGC ERTERHERLE KWSQRFDLAG FGNVPLSCYS MLQARRLLQS  420
YGCEGYRIKE ENGCAAICWQ DRPLYSVSSW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-55134531380Protein SCARECROW
5b3h_D5e-55134531380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557509.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_010557510.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4JY520.0V4JY52_EUTSA; Uncharacterized protein
STRINGXP_010557509.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]