PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557599.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 171aa MW: 19259 Da PI: 9.1809

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	191.8	3.2e-59	8	160	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +++eq+Cy+ CnfCn +lavsvP +s+f +vtvrCGhCt+l svn+a a q l+ + + + +e ++ + ++++++++ + XP_010557599.1 8 ATAAEQLCYIPCNFCNIVLAVSVPCSSMFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF---QAPNYFIQEYRN------EFGSSSRCHNKVPPR 93 5689****************************************9999888877664...333333333332......222333333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++ v +rP krqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_010557599.1 94 ISTRTAGEQRV-----ENRPTGKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160 22122233333.....38**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.3E-68	10	160	IPR006780	YABBY protein
SuperFamily	SSF47095	6.41E-8	103	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	114	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAGCINTATA AEQLCYIPCN FCNIVLAVSV PCSSMFDIVT VRCGHCTNLW SVNMAAALQS 60 LSRPNFQAPN YFIQEYRNEF GSSSRCHNKV PPRISTRTAG EQRVENRPTG KRQRVPSAYN 120 QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLENNKQAKL A

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557599.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557599.1	1e-126	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-101	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1J3EWH2	1e-101	A0A1J3EWH2_NOCCA; Axial regulator YABBY 5
STRING	XP_010557599.1	1e-126	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-103	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]