PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557603.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 253aa    MW: 28929.7 Da    PI: 9.6638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-155097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd++l  +v+ +G g+W+ I+r+ g++R +k+c++rw +yl
   XP_010557603.1 50 RGLWKPEEDLILRSYVEAFGEGNWADISRRTGLKRGGKSCRLRWKNYL 97
                     788*****************************99************97 PP
2Myb_DNA-binding53.45.9e-17103148148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010557603.1 103 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 148
                      6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9874597IPR017930Myb domain
SuperFamilySSF466894.87E-2947144IPR009057Homeodomain-like
SMARTSM007172.5E-134999IPR001005SANT/Myb domain
PfamPF002497.6E-145097IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2251104IPR009057Homeodomain-like
CDDcd001673.10E-105397No hitNo description
PROSITE profilePS5129425.80198152IPR017930Myb domain
SMARTSM007171.7E-16102150IPR001005SANT/Myb domain
PfamPF002492.5E-15103148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-24105151IPR009057Homeodomain-like
CDDcd001677.38E-13106148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQSLSLSPSL YGLYKDFTIF NALLIQRERE RERERERDME KREGKCRVKR GLWKPEEDLI  60
LRSYVEAFGE GNWADISRRT GLKRGGKSCR LRWKNYLRPN IKRGGMSPEE EDLIIRMHKL  120
LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK KSESSKRKAD ESGGKTQGID TDTKNKQCAS  180
PSLMASKGVM GQGREEANGE KREDSIVTSS TWTEGMNGFG YGIASPLPFP DYETSVFDDP  240
QSSFAFADMF PLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-244815125127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RERERERERER
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557603.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557603.10.0PREDICTED: transcription factor MYB82-like isoform X2
SwissprotQ9LTF71e-81MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN83e-83R0GVN8_9BRAS; Uncharacterized protein
STRINGXP_010557600.11e-165(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-83myb domain protein 82