PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557748.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 257aa MW: 29786.8 Da PI: 8.7786

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.5e-23	90	180	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GF vr + ++s +g++ r++ C+k+g++ +++ + e+r+r + r gCka++ vk e +gkw+vt++++ HnH+l XP_010557748.1 90 NFYVEYARRLGFVVRLMQRRRSGIDGRTLARRLGCNKQGFSPNSHGStdFGAEKRPRHSGREGCKATILVKTEISGKWVVTRFVKGHNHPL 180 6*************************************999888755678999********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-22	90	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MKIFKCIGFK YFHRVVCACY YQFDPFFFPA SSARPRVHFD SSSPQLFFNL DLGNRDDPGD 60 RKLHGSERGG GEILEPYVGM EFESEDDAKN FYVEYARRLG FVVRLMQRRR SGIDGRTLAR 120 RLGCNKQGFS PNSHGSTDFG AEKRPRHSGR EGCKATILVK TEISGKWVVT RFVKGHNHPL 180 ILTASPYNSL ADKDRQIEEL TRELEQQNLL CSAYRERLLR FMNNVEQQTE ELSFKIRDIV 240 ENVKKLESEM HLNLSFE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557748.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557748.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1R3H4Q3	4e-94	A0A1R3H4Q3_COCAP; Uncharacterized protein
TrEMBL	A0A1R3KL35	3e-94	A0A1R3KL35_9ROSI; Uncharacterized protein
STRING	XP_010557748.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	5e-80	FAR1 family protein