PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557750.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 208aa MW: 23944 Da PI: 8.0918

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.5e-24	41	131	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GF vr + ++s +g++ r++ C+k+g++ +++ + e+r+r + r gCka++ vk e +gkw+vt++++ HnH+l XP_010557750.1 41 NFYVEYARRLGFVVRLMQRRRSGIDGRTLARRLGCNKQGFSPNSHGStdFGAEKRPRHSGREGCKATILVKTEISGKWVVTRFVKGHNHPL 131 6*************************************999888755678999********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-22	41	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDLGNRDDPG DRKLHGSERG GGEILEPYVG MEFESEDDAK NFYVEYARRL GFVVRLMQRR 60 RSGIDGRTLA RRLGCNKQGF SPNSHGSTDF GAEKRPRHSG REGCKATILV KTEISGKWVV 120 TRFVKGHNHP LILTASPYNS LADKDRQIEE LTRELEQQNL LCSAYRERLL RFMNNVEQQT 180 EELSFKIRDI VENVKKLESE MHLNLSFE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557750.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557750.1	1e-154	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	4e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1R3H4Q3	2e-95	A0A1R3H4Q3_COCAP; Uncharacterized protein
STRING	XP_010557748.1	1e-151	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-81	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]