PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557784.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 357aa MW: 40711.3 Da PI: 8.6288

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.1e-12	291	336	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR+ri +++ +L++l P +k s a++L +Av++Ik+Lq XP_010557784.1 291 SIAERVRRNRISQRMKRLQDLFPDM----DKQTSTADMLDMAVDHIKELQ 336 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.513	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	288	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-11	289	340	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.8E-14	290	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	291	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-9	291	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSLVYDHDFK CPEADFRKNQ DFMDPYYPNH RQEQLIHTNG SPRHWSTPSN FSDDTFKNGG 60 VNDNCEGGYR PFQPSSPQMD SFFAEVIKTE HKKEAITQQS SNLGMQDSSF GFMNNGGLET 120 RMQAKRVHDS FRGSGLVKQH SSPPGLLSNL MMENEFSFTS DFRDLKNSKD VHGEASSSKK 180 VANNHMDLEH RPQLSRSSIM PHQVSDIGID FSSDSWDKTS FNVFKGTGGT NITFSGSETQ 240 NENSRNRLVH HLSQPITFSE KDTVEKFLHF QETTVPFKVR AKRGFATHPR SIAERVRRNR 300 ISQRMKRLQD LFPDMDKQTS TADMLDMAVD HIKELQKQVK DLNESRGKCR CSGKGKA

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSLVYDHDFK CPEADFRKNQ DFMDPYYPNH RQEQLIHTNG SPRHWSTPSN FSDDTFKNGG  60
VNDNCEGGYR PFQPSSPQMD SFFAEVIKTE HKKEAITQQS SNLGMQDSSF GFMNNGGLET  120
RMQAKRVHDS FRGSGLVKQH SSPPGLLSNL MMENEFSFTS DFRDLKNSKD VHGEASSSKK  180
VANNHMDLEH RPQLSRSSIM PHQVSDIGID FSSDSWDKTS FNVFKGTGGT NITFSGSETQ  240
NENSRNRLVH HLSQPITFSE KDTVEKFLHF QETTVPFKVR AKRGFATHPR SIAERVRRNR  300
ISQRMKRLQD LFPDMDKQTS TADMLDMAVD HIKELQKQVK DLNESRGKCR CSGKGKA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557784.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557784.1	0.0	PREDICTED: transcription factor bHLH130-like
STRING	XP_010557784.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25380	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-44	bHLH family protein