PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557797.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YA

Protein Properties

Length: 247aa MW: 27423 Da PI: 9.9049

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.6	1.8e-32	150	206	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Ra++e ekk+ +k rkpylheSRh hA+rR+RgsgGrF XP_010557797.1 150 EEPVYVNAKQYHGILRRRQSRARAELEKKV-IKVRKPYLHESRHLHAMRRARGSGGRF 206 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-36	148	209	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.055	149	209	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.8E-28	151	206	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-24	152	174	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-24	183	206	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MPTKADSGHR QLDHGTQTVF QSNMHVQPWW RGVVSSTSTG ETTSKASPSD HLTSSMPMQT 60 AANLVDKGVY PGQGDHLKCV PSTDPVTIAK NADLNSQMEL VGHSIVMMSY PYSDPQYGTM 120 LASYGPHGLV SPQMYGVHQT RMPLPLEMEE EPVYVNAKQY HGILRRRQSR ARAELEKKVI 180 KVRKPYLHES RHLHAMRRAR GSGGRFLNTK KLENNGTSPN PEKETNAGRE CSETAMRIHA 240 ANKGGFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	150	210	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557797.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557797.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019059703.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A0D2PDJ8	2e-88	A0A0D2PDJ8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8J142	2e-88	A0A1U8J142_GOSHI; nuclear transcription factor Y subunit A-4-like
STRING	XP_010557797.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16019	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	2e-36	nuclear factor Y, subunit A1