PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557856.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 161aa    MW: 17554.8 Da    PI: 9.7792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-2077133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse...ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIr+ ++   +g++ r +lg+f taeeAa a+++a+ +l g
  XP_010557856.1  77 KKFRGVRQRP-WGKWAAEIRCGRSrhtRGRSDRLWLGTFNTAEEAALAYDNAAIQLIG 133
                     59********.**********5554544477**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.5E-311158IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.39E-2477140No hitNo description
PfamPF008473.9E-1478133IPR001471AP2/ERF domain
SMARTSM003802.9E-2878147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-2778140IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1978141IPR016177DNA-binding domain
PROSITE profilePS5103221.00878141IPR001471AP2/ERF domain
PRINTSPR003674.5E-117990IPR001471AP2/ERF domain
PRINTSPR003674.5E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRRVVRISCT DPEATDSSSE EDECGSAPAR SRGKKLVKKI VIDPSDSSGG PKACKARTSF  60
KIRIPSAFLD DVAAERKKFR GVRQRPWGKW AAEIRCGRSR HTRGRSDRLW LGTFNTAEEA  120
ALAYDNAAIQ LIGPHAPTNF GCPALPSPTE KQESGDGNDV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1872140871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557856.11e-115PREDICTED: ethylene-responsive transcription factor ERF070-like isoform X2
RefseqXP_019059609.11e-115PREDICTED: ethylene-responsive transcription factor ERF070-like isoform X1
SwissprotQ9C9952e-63ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3APU11e-61A0A0D3APU1_BRAOL; Uncharacterized protein
STRINGXP_010557856.11e-114(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.16e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]