PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557895.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YC
Protein Properties Length: 310aa    MW: 34334.4 Da    PI: 5.478
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC551.8e-1717912498
           NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  XP_010557895.1 17 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 91
                    8*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.9E-171676IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.4E-231777IPR009072Histone-fold
SuperFamilySSF471131.11E-182393IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRKKLDTRFP AMRNLQARIK KIMQADEDVG KIALAVPVLV SKALELFLQD LCDRTYEITL  60
ERGAKTVSSL HLKHCVERYN VFDFLREVVS KVPDYGHGHG HGHGHSDATM DERNISKRRK  120
PVGDEDSDEE LKKSRMQEMG NAGPSGRGRG RGRGRGRGRG GGRTAEREHP PHLNREMEVE  180
PPSLTAAPLP QEATSMIPPP SSLPSPQAIK QDAVDGVVPP PAAEDESSQP NPQLQSPNET  240
NTGIRTFDLN SVSVDNNIEP KPQTVATATE MKPEEYPGWS ISEMGKIDPM QLASMGKRLD  300
EDEEDYDEEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-17277575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148158RGRGRGRGRGR
2150159RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2751462e-32DQ275146.1 Boechera stricta At3g12480-like protein, At3g12490-like protein, At3g12500-like protein, At3g12510-like protein, At3g12520-like protein, At3g12530-like protein, At3g12540-like protein, unknown protein, At3g12550-like protein, and At3g12560-like protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557895.10.0PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBLA0A087G5E61e-107A0A087G5E6_ARAAL; Uncharacterized protein
STRINGXP_010557895.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-90nuclear factor Y, subunit C11