PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557896.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YC
Protein Properties Length: 305aa    MW: 33691.7 Da    PI: 5.3154
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.53.4e-196861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  XP_010557896.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86
                    5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-26372IPR009072Histone-fold
SuperFamilySSF471133.83E-20496IPR009072Histone-fold
PfamPF008081.2E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLERGAK  60
TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHGHGHGHGH SDATMDERNI SKRRKPVGDE  120
DSDEELKKSR MQEMGNAGPS GRGRGRGRGR GRGRGGGRTA EREHPPHLNR EMEVEPPSLT  180
AAPLPQEATS MIPPPSSLPS PQAIKQDAVD GVVPPPAAED ESSQPNPQLQ SPNETNTGIR  240
TFDLNSVSVD NNIEPKPQTV ATATEMKPEE YPGWSISEMG KIDPMQLASM GKRLDEDEED  300
YDEEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-20272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143153RGRGRGRGRGR
2145154RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2751462e-32DQ275146.1 Boechera stricta At3g12480-like protein, At3g12490-like protein, At3g12500-like protein, At3g12510-like protein, At3g12520-like protein, At3g12530-like protein, At3g12540-like protein, unknown protein, At3g12550-like protein, and At3g12560-like protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557896.10.0PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBLA0A087G5E61e-110A0A087G5E6_ARAAL; Uncharacterized protein
STRINGXP_010557895.11e-180(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-93nuclear factor Y, subunit C11