PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557941.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 244aa    MW: 25553.6 Da    PI: 9.9214
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-073760225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_010557941.1 37 KSKPCTKFFSTSGCPFGENCHFLH 60
                    7789******************** PP
2zf-CCCH37.83.3e-12210235127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+lC +f++ G C +GdrC+FaHg+
  XP_010557941.1 210 YKTKLCERFSK-GNCTFGDRCHFAHGE 235
                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843563IPR000571Zinc finger, CCCH-type
SMARTSM003560.213562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-63662IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-83760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.62E-16100180IPR004088K Homology domain, type 1
SMARTSM003223.5E-12110180IPR004087K Homology domain
PROSITE profilePS5008414.697111175IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-16111179IPR004088K Homology domain, type 1
CDDcd001053.66E-14113175No hitNo description
PfamPF000132.7E-12113177IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.5E-17204241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.234209236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9209239IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8209235IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9210235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDARKRGRPD AGAYNSNGGF KRSKQEMESY STGLGSKSKP CTKFFSTSGC PFGENCHFLH  60
YVPGGYNVVS QMTNLGPPVP QVSRNMPGSG PGRYSGRTEP GPGPVSSFGA SATAKISVDA  120
SLAGAIIGKG GINSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGTFEQINE ASAMVRELIV  180
RVGSAARRPS GGGGGGGGGS EGKPHPGSNY KTKLCERFSK GNCTFGDRCH FAHGEAELRK  240
PGVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189199SGGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557941.11e-179PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557942.11e-179PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557944.11e-179PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557945.11e-179PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
SwissprotQ9C7C31e-138C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-143E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-143V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_010557941.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-134C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]