PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557949.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 313aa    MW: 34881.3 Da    PI: 9.2781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69e-18171225256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010557949.1 171 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225
                     788899***********************************************98 PP
2HD-ZIP_I/II128.13.6e-41171261192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_010557949.1 171 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 261
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-17152225IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18161228IPR009057Homeodomain-like
PROSITE profilePS5007117.119167227IPR001356Homeobox domain
SMARTSM003891.0E-15169231IPR001356Homeobox domain
PfamPF000463.0E-15171225IPR001356Homeobox domain
CDDcd000861.09E-15171228No hitNo description
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
CDDcd146860.00604220259No hitNo description
PfamPF021836.1E-11227261IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25227270IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MELALSLGDS TKKPFPFLVK PSTSTINASS SSSSDKDLGF CMGLDAGFGR RSSSSSEEEK  60
TTPKFSDRFR VSSPDPPLKL DLRPFTPIPP YDHLPFPWLP ENGGQYRGRR QDTNRLSTTA  120
AAGEEEAVPS PPHSVTSSIR LDFGIMGHGK RDEMERSASR ASDDEENGSA RKKLRLSKEQ  180
SAFLEESFKE HNTLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTEENRRL QKELQELRAL KTSRPFYMQL PATTLTMCPS CERVATTAPP PSTVSGKNSG  300
IATSSCPAKA HAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557949.10.0PREDICTED: homeobox-leucine zipper protein HAT14
SwissprotP466651e-120HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLD7LZT31e-122D7LZT3_ARALL; Homeobox-leucine zipper protein 14
STRINGXP_010557949.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-104homeobox from Arabidopsis thaliana