PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558068.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 161aa MW: 17656.3 Da PI: 7.7914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C++apyf +++pk+fa vhk+FGasnv+kll ++pe++r+++++sl+yeAe+r++dPvyG++g i +lq+++ +l+++la XP_010558068.1 11 SCAACKLLKRRCVPSCIFAPYFRSSDPKTFAKVHKVFGASNVSKLLVEIPEDQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQRKMLELQHDLA 105 6*********************************************************************************************9 PP DUF260 96 llkee 100 ++++ XP_010558068.1 106 IARSR 110 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.868	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MRGHEPRSSS SCAACKLLKR RCVPSCIFAP YFRSSDPKTF AKVHKVFGAS NVSKLLVEIP 60 EDQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQRKMLEL QHDLAIARSR LARATQVSVS 120 DDPAASLAGV LDIVPGYSEL MLLDGFTFDC SLYDLGQSPF V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-44	6	113	6	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-44	6	113	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558068.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558068.1	1e-115	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-85	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A087H8P0	5e-85	A0A087H8P0_ARAAL; Uncharacterized protein
STRING	XP_010558068.1	1e-115	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-88	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]