PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558215.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27331.9 Da    PI: 7.664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1984136456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + ++t++ql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  XP_010558215.1  84 KKRLTSSQLASLERSFHEEIKLDSDRKMKLSRELGLQPRQIAVWFQNRRARWK 136
                     5569************************************************9 PP
2HD-ZIP_I/II114.28e-3783173292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl++ q+++LE+sF+ee kL+++rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+ +yda+++e+ rL++ev++Lr+ l+
  XP_010558215.1  83 KKKRLTSSQLASLERSFHEEIKLDSDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRLEYDAVAQEKLRLQEEVKKLRAILR 173
                     9**************************************************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1877140IPR009057Homeodomain-like
PROSITE profilePS5007116.60178138IPR001356Homeobox domain
SMARTSM003893.1E-1781142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1982141IPR009057Homeodomain-like
PfamPF000461.5E-1684136IPR001356Homeobox domain
CDDcd000862.03E-1586139No hitNo description
PRINTSPR000314.3E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000314.3E-5118134IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEWSNENVRA ALMPRWPYPN HPFNLLHNFS FDPYAGNSST TADTQTGPVL PVPEPENVTN  60
GNRFLNNSND SNEKVMMMTM MMKKKRLTSS QLASLERSFH EEIKLDSDRK MKLSRELGLQ  120
PRQIAVWFQN RRARWKAKQL EQLYDSLRLE YDAVAQEKLR LQEEVKKLRA ILRDQGLNKK  180
QISTGTVDFS GGDETAEITS VIAPPRSENH LAGGNFLYSI DEYNDPVVLA GSPCWPSMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558215.11e-180PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR03e-99ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLV4LKE41e-100V4LKE4_EUTSA; Uncharacterized protein
STRINGXP_010558215.11e-179(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-97homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]