PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558259.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 597aa    MW: 65804 Da    PI: 4.8168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.35.8e-1102315973374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L +cA+ +++ +  +a ++L r++e +s+ gdp++R+ +yf+eAL +rl+    e  +a + s++   + ++ + ++k++++++P+ kf+hlt
  XP_010558259.1 231 KALHDCAQIIET-EPDRAAETLVRIRESVSKLGDPTERVGFYFVEALFERLSP---EADSAARESPA---SLEDYILSYKTLNDACPYSKFAHLT 318
                     7899****9998.6677888999*****************************9...44444444444...4999********************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+++++++Hi+Df+i qG+QW+aLlqa+a+R++g+p ++Ri g+ +++ g     +l +tg+rL++fA+ l+++fef++ + + ++ l
  XP_010558259.1 319 ANQAILEATDKASKIHIVDFGIVQGIQWAALLQAMATRASGKPtRIRISGIPASSLGdsPGPSLAATGNRLRDFARLLDLNFEFDP-ILTPIHLL 412
                     ***************************************77776*********888888999************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + +++r++pgEalaVn++lql +llde+    +   + L+l ksl P++v++ e ea++n+  F +r+ +al++ysa+f+sle +l res++r  
  XP_010558259.1 413 NGSNFRIEPGEALAVNCMLQLCTLLDETPVAVE---TALRLAKSLDPRIVTLGEYEASLNRVGFSNRVKNALRFYSAMFESLEPNLQRESQDRLR 504
                     *************************99888877...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +Er+++gr+i++++  e+   rrer+e +e+Wr  le++G+++v+ls++a++qa+ ll +++ s  y++ e +  ++ l W+d pL++vS+Wr
  XP_010558259.1 505 IERVIMGRRISDLIRPEKPGtRRERMEDKEQWRVLLEKSGLESVALSNYAVSQARILLWNYNySTLYSLIETEPGFIsLAWNDVPLLTVSSWR 597
                     *****************9877*****************************************9999**9999999998**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.628203575IPR005202Transcription factor GRAS
PfamPF035142.0E-107231597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QPHDHQIFGT NPLSINPWPN TTTHQSLGFG  60
LPGPGFSDPF HVSAVGESGD PVFPFSQLEH HNPSGGGGFR FSDFGGVTGG EFDSDEWMES  120
LIGGGDSATD GSGCDVWQNN PDFVIYGPDP FVACPNRLSV ACSQPSDLNR VIFSDKKDPA  180
SPPHPPPVST SMWAPSPPQE LARTAATKDT RRNESVAEPS SDFDLGSTFL KALHDCAQII  240
ETEPDRAAET LVRIRESVSK LGDPTERVGF YFVEALFERL SPEADSAARE SPASLEDYIL  300
SYKTLNDACP YSKFAHLTAN QAILEATDKA SKIHIVDFGI VQGIQWAALL QAMATRASGK  360
PTRIRISGIP ASSLGDSPGP SLAATGNRLR DFARLLDLNF EFDPILTPIH LLNGSNFRIE  420
PGEALAVNCM LQLCTLLDET PVAVETALRL AKSLDPRIVT LGEYEASLNR VGFSNRVKNA  480
LRFYSAMFES LEPNLQRESQ DRLRIERVIM GRRISDLIRP EKPGTRRERM EDKEQWRVLL  540
EKSGLESVAL SNYAVSQARI LLWNYNYSTL YSLIETEPGF ISLAWNDVPL LTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1382295974375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558259.10.0PREDICTED: scarecrow-like protein 4 isoform X1
RefseqXP_010558267.10.0PREDICTED: scarecrow-like protein 4 isoform X2
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLE4MVR50.0E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBLV4KUV40.0V4KUV4_EUTSA; Uncharacterized protein
STRINGXP_010558259.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]