PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558556.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 458aa MW: 51470.1 Da PI: 5.679

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.7	1.5e-25	362	412	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+ kyF+lpi++AA+++++c+Tv+K+iCR+ G++RWPhRkiks+ XP_010558556.1 362 TGKLTLKDIGKYFHLPIEEAARTMKLCPTVVKKICRRGGLARWPHRKIKSV 412 5689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	3.66E-7	121	188	No hit	No description
PROSITE profile	PS51519	17.461	352	432	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	364	412	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MAGDPMSDAD DSFHDPYDGP FTDEELFNII SDPDPSLLDL SLNDPIIGDA NPPLPPAPME 60 TSINVNNVVG DPPLPEFPHG STNDQTLSWT RIGMLGDEAV GNVGDGNNNL EGSSWEIRGD 120 HLHQHQHHQH QHHPPHPHDQ HQYQYQQQQQ QQQQQQQQHQ QQHQHHHHNA ESYEAGESSS 180 MPVSVRPPRG EGGAFVCNCC QPLRELIHTN GQEVTRLDIH GRIGMICHAN LIIQPDIATS 240 EEYGYQTFHF GNQSNEEVKE FLEQYCAERA QAGFWMVQDS LASFYQMMSI GLDMDPHGLE 300 PFDTGLQNSA SDVVVPIAST SAATVSAAPA QEEPPPVKNE QAGPSKEREK KKTPLAAQRE 360 RTGKLTLKDI GKYFHLPIEE AARTMKLCPT VVKKICRRGG LARWPHRKIK SVERKMSTWR 420 SVIRTTKKPE ERARAEAEIQ KLEAEIDKIR SDALRDFD

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MAGDPMSDAD DSFHDPYDGP FTDEELFNII SDPDPSLLDL SLNDPIIGDA NPPLPPAPME  60
TSINVNNVVG DPPLPEFPHG STNDQTLSWT RIGMLGDEAV GNVGDGNNNL EGSSWEIRGD  120
HLHQHQHHQH QHHPPHPHDQ HQYQYQQQQQ QQQQQQQQHQ QQHQHHHHNA ESYEAGESSS  180
MPVSVRPPRG EGGAFVCNCC QPLRELIHTN GQEVTRLDIH GRIGMICHAN LIIQPDIATS  240
EEYGYQTFHF GNQSNEEVKE FLEQYCAERA QAGFWMVQDS LASFYQMMSI GLDMDPHGLE  300
PFDTGLQNSA SDVVVPIAST SAATVSAAPA QEEPPPVKNE QAGPSKEREK KKTPLAAQRE  360
RTGKLTLKDI GKYFHLPIEE AARTMKLCPT VVKKICRRGG LARWPHRKIK SVERKMSTWR  420
SVIRTTKKPE ERARAEAEIQ KLEAEIDKIR SDALRDFD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558556.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ415921	0.0	DQ415921.1 Cleome spinosa clone BAC Cs2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558556.1	0.0	PREDICTED: protein NLP1 isoform X1
TrEMBL	Q1KUR9	0.0	Q1KUR9_9ROSI; Uncharacterized protein
STRING	XP_010558556.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-12	RWP-RK domain-containing protein